The Nightly Dev Build job failed on Friday (2025-01-03)

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The Nightly Dev Build job failed on Friday (2025-01-03) in run 12606450238

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The Nightly Dev Build job failed on Saturday (2025-01-04) in run 12615586013

[github-actions]

The Nightly Dev Build job failed on Sunday (2025-01-05) in run 12625110476

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The Nightly Dev Build job failed on Monday (2025-01-06) in run 12643720683

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The Nightly Dev Build job failed on Tuesday (2025-01-07) in run 12662606583

[jdblischak]

The nightly builds are also failing on my fork.

The error occurs during installation:

installing TileDB via building locally...
Downloading https://github.com/TileDB-Inc/TileDB/archive/refs/heads/main.zip: https://github.com/TileDB-Inc/TileDB/archive/refs/heads/main.zip  ...
Converting zip to tar.gz ...
tools/buildTileDB.sh: line 49: ../tiledb-src/bootstrap: No such file or directory
using inst/tiledb/{lib,include}
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++17
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -I../inst/include/  -I../inst/tiledb/include   -DTILEDB_SILENT_BUILD  -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppInt64/include' -I'/usr/lib/R/site-library/nanoarrow/include'     -fpic  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-4sITk6/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-4sITk6/r-base-4.4.2=/usr/src/r-base-4.4.2-1.2[40](https://github.com/TileDB-Inc/TileDB-R/actions/runs/12606450238/job/35136590615#step:8:41)4.0 -Wdate-time -D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
../inst/include/tiledb.h:8:10: fatal error: tiledb/tiledb: No such file or directory
    8 | #include <tiledb/tiledb>
      |          ^~~~~~~~~~~~~~~
compilation terminated.
make: *** [/usr/lib/R/etc/Makeconf:204: RcppExports.o] Error 1
ERROR: compilation failed for package ‘tiledb’
* removing ‘/usr/local/lib/R/site-library/tiledb’

The last passing build occurred the evening of Jan 2nd from commit ba40daf. The first failing build occurred the evening of Jan 3rd from commit 1ceaba1.

So this means the error is likely related to the update of the default branch of the TileDB repo from dev to main (#789, TileDB-Inc/TileDB#5407).

I suspect the following lines are the culprit. After unzipping the zipfile, the directory will be TileDB-main/ not TileDB-dev/:

TileDB-R/tools/fetchTileDBSrc.R

Lines 42 to 49 in bec1903

	if (grepl("zip$", url)) {
	cat("Converting zip to tar.gz ...\n")
	unzip("tiledb.tar.gz")
	unlink("tiledb.tar.gz")
	Sys.chmod("TileDB-dev/bootstrap", mode="0755")
	options(warn=-1)
	tar("tiledb.tar.gz", "TileDB-dev", compression="gzip")
	}