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 <div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">AbstractMCMC</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li class="is-active"><a class="tocitem" href>API</a><ul class="internal"><li><a class="tocitem" href="#Model"><span>Model</span></a></li><li><a class="tocitem" href="#Sampler"><span>Sampler</span></a></li><li><a class="tocitem" href="#Sampling-a-single-chain"><span>Sampling a single chain</span></a></li><li><a class="tocitem" href="#Sampling-multiple-chains-in-parallel"><span>Sampling multiple chains in parallel</span></a></li><li><a class="tocitem" href="#Common-keyword-arguments"><span>Common keyword arguments</span></a></li><li><a class="tocitem" href="#Chains"><span>Chains</span></a></li></ul></li><li><a class="tocitem" href="../design/">Design</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>API</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>API</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/TuringLang/AbstractMCMC.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/TuringLang/AbstractMCMC.jl/blob/master/docs/src/api.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="API"><a class="docs-heading-anchor" href="#API">API</a><a id="API-1"></a><a class="docs-heading-anchor-permalink" href="#API" title="Permalink"></a></h1><p>AbstractMCMC defines an interface for sampling Markov chains.</p><h2 id="Model"><a class="docs-heading-anchor" href="#Model">Model</a><a id="Model-1"></a><a class="docs-heading-anchor-permalink" href="#Model" title="Permalink"></a></h2><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="AbstractMCMC.AbstractModel" href="#AbstractMCMC.AbstractModel"><code>AbstractMCMC.AbstractModel</code></a> — <span class="docstring-category">Type</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">AbstractModel</code></pre><p>An <code>AbstractModel</code> represents a generic model type that can be used to perform inference.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/TuringLang/AbstractMCMC.jl/blob/fc8cfa666eee1230298c2dec6d970c594c98e49d/src/AbstractMCMC.jl#L45-L49">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="AbstractMCMC.LogDensityModel" href="#AbstractMCMC.LogDensityModel"><code>AbstractMCMC.LogDensityModel</code></a> — <span class="docstring-category">Type</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">LogDensityModel &lt;: AbstractMCMC.AbstractModel</code></pre><p>Wrapper around something that implements the LogDensityProblem.jl interface.</p><p>Note that this does <em>not</em> implement the LogDensityProblems.jl interface itself, but it simply useful for indicating to the <code>sample</code> and other <code>AbstractMCMC</code> methods that the wrapped object implements the LogDensityProblems.jl interface.</p><p><strong>Fields</strong></p><ul><li><code>logdensity</code>: The object that implements the LogDensityProblems.jl interface.</li></ul></div><a class="docs-sourcelink" target="_blank" href="https://github.com/TuringLang/AbstractMCMC.jl/blob/fc8cfa666eee1230298c2dec6d970c594c98e49d/src/logdensityproblems.jl#L1-L12">source</a></section></article><h2 id="Sampler"><a class="docs-heading-anchor" href="#Sampler">Sampler</a><a id="Sampler-1"></a><a class="docs-heading-anchor-permalink" href="#Sampler" title="Permalink"></a></h2><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="AbstractMCMC.AbstractSampler" href="#AbstractMCMC.AbstractSampler"><code>AbstractMCMC.AbstractSampler</code></a> — <span class="docstring-category">Type</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">AbstractSampler</code></pre><p>The <code>AbstractSampler</code> type is intended to be inherited from when implementing a custom sampler. Any persistent state information should be saved in a subtype of <code>AbstractSampler</code>.</p><p>When defining a new sampler, you should also overload the function <code>transition_type</code>, which tells the <code>sample</code> function what type of parameter it should expect to receive.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/TuringLang/AbstractMCMC.jl/blob/fc8cfa666eee1230298c2dec6d970c594c98e49d/src/AbstractMCMC.jl#L32-L42">source</a></section></article><h2 id="Sampling-a-single-chain"><a class="docs-heading-anchor" href="#Sampling-a-single-chain">Sampling a single chain</a><a id="Sampling-a-single-chain-1"></a><a class="docs-heading-anchor-permalink" href="#Sampling-a-single-chain" title="Permalink"></a></h2><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="StatsBase.sample-Tuple{AbstractRNG, AbstractMCMC.AbstractModel, AbstractMCMC.AbstractSampler, Any}" href="#StatsBase.sample-Tuple{AbstractRNG, AbstractMCMC.AbstractModel, AbstractMCMC.AbstractSampler, Any}"><code>StatsBase.sample</code></a> — <span class="docstring-category">Method</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">sample(
     rng::Random.AbatractRNG=Random.default_rng(),
     model::AbstractModel,

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     rng::Random.AbstractRNG,
     model::AbstractMCMC.AbstractModel,

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 <div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href>AbstractMCMC</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li class="is-active"><a class="tocitem" href>Home</a></li><li><a class="tocitem" href="api/">API</a></li><li><a class="tocitem" href="design/">Design</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/TuringLang/AbstractMCMC.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/TuringLang/AbstractMCMC.jl/blob/master/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="AbstractMCMC.jl"><a class="docs-heading-anchor" href="#AbstractMCMC.jl">AbstractMCMC.jl</a><a id="AbstractMCMC.jl-1"></a><a class="docs-heading-anchor-permalink" href="#AbstractMCMC.jl" title="Permalink"></a></h1><p><em>Abstract types and interfaces for Markov chain Monte Carlo methods.</em></p><p>AbstractMCMC defines an interface for sampling and combining Markov chains. It comes with a default sampling algorithm that provides support of progress bars, parallel sampling (multithreaded and multicore), and user-provided callbacks out of the box. Typically developers only have to define the sampling step of their inference method in an iterator-like fashion to make use of this functionality. Additionally, the package defines an iterator and a transducer for sampling Markov chains based on the interface.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Friday 4 October 2024 20:42">Friday 4 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>