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Copy path2017_11_28_session_log.txt
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2017_11_28_session_log.txt
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source('run.R')
View(dct01)
subset(dct01,!meta)$column
subset(dct01,!meta&num)$column
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd','race_cd'),data = dat03)
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd','race_cd'),data = dat03) %>% View()
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd','race_cd'),data = dat03)
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03)
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% xtable(type='html')
library(xtable)
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% xtable(type='html')
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% class()
methods(class='TableOne')
?print.TableOne
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print() %>% View()
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print() %>% xtable(type='html')
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print() %>% xtable() %>% class
methods(class='xtable')
?print.xtable
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print() %>% xtable() %>% print(type='html')
?print.TableOne
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print(printToggle=F) %>% xtable() %>% print(type='html')
length(unique(dat02$patient_num))
source('run.R')
debugSource('/tmp/2017-fall-TSCI-5050/TSCI5050_HW02.R')
debugSource('/tmp/2017-fall-TSCI-5050/TSCI5050_HW02.R')
debugSource('/tmp/2017-fall-TSCI-5050/TSCI5050_HW02.R')
source('/tmp/2017-fall-TSCI-5050/run.R')
source('/tmp/2017-fall-TSCI-5050/TSCI5050_HW02.R')
sampled
nrow(dat02)
View(dat01)
View(dat03)
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print(printToggle=F) %>% View()
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% View()
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd'),data = dat03) %>% print(printToggle=F) %>% View()
CreateTableOne(vars=subset(dct01,!meta & num)$column, strata=c('sex_cd','race_cd'),data = dat03) %>% print(printToggle=F) %>% View()
CreateTableOne(vars=c(subset(dct01,!meta & num)$column,'v001_unspcfd_asthmtcs'), strata=c('sex_cd','race_cd'),data = dat03) %>% print(printToggle=F) %>% View()
summary(lm01);
summary(lm01);
class(lm01)
is.list(lm01)
class(lm01) <- 'TSCI'
class(lm01)
summary(lm01)
class(lm01) <- 'list'
summary(lm01)
class(lm01)
class(lm01)<-'lm'
summary(lm01)
summary.default(lm01)
lm01$call
eval(lm01$call)
lm01
'3'
3
print.lm(lm01)
methods(class='lm')
methods(class='list')
glance(lm01)
glance(lm01)
glance(lm01)
glance(dat03)
glance(as.list(dat03))
glance(as.list(lm01))
tidy(lm01)
glance(lm01)
tidy(dat03)
lm01$coefficients
class(lm01)
class(summary(lm01))
summary.default(summary(lm01))
cbind(class(summary(lm01)),summary.default((lm01)))
summary.default(summary(lm01))
summary(lm01)$coefficients
lm01$coefficients
plot(lm01)
plot(lm01)
hist(dat03$age_at_visit_days)
hist(dat03$age_at_visit_days/365.25)
lm01$call
hist(dat03$v003_Strtn_LNC_2710_2_num)
plot(v003_Strtn_LNC_2710_2_num ~ age_at_visit_days, dat03)
plot(v003_Strtn_LNC_2710_2_num ~ age_at_visit_days, dat03,log='y')
plot(v003_Strtn_LNC_2710_2_num ~ age_at_visit_days, dat03,log='x')
plot(v003_Strtn_LNC_2710_2_num ~ age_at_visit_days, dat03,log='xy')
boxcox(lm01)
boxcox(lm01)
?boxcox
lm01
subset(dct01,!meta & num)$column
subset(dct01,!meta & num)$column[-1]
subset(dct01,!meta)
subset(dct01,!meta)$column
subset(dct01,!meta)$column[-7]
paste(letter,LETTERS)
paste(letters,LETTERS)
paste(letters[1:3],LETTERS)
paste(letters[1:3],LETTERS,sep = '.')
paste(letters[1:3],LETTERS,sep = '.',collapse = '_')
paste(letters[1:3],LETTERS,sep = '.',collapse = '+')
paste(letters[1:3],collapse = '+')
paste(letters[1:3])
paste(letters[1:3],collapse = '+')
subset(dct01,!meta)$column[-7]
subset(dct01,!meta)$column[-7] %>% paste(collapse='+')
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num',.)
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.)
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.)
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% class()
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula()
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula()
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() %>% class(
)
)
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() %>% class
subset(dct01,!meta)$column[-7] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() -> formula01
formula01
lm02 <- update(lm01,formula01)
lm02 <- update(lm01,formula01)
subset(dct01,!meta)$column[-7][1:4] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() %>% class
subset(dct01,!meta)$column[-7][1:4] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() -> formula01
formula01
subset(dct01,!meta)$column[-7][c(1,2,4:7)] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() -> formula01
formula()
formula01
lm02 <- update(lm01,formula01)
subset(dct01,!meta)$column[-7][c(1,4:7)] %>% paste(collapse='+') %>% paste('v003_Strtn_LNC_2710_2_num','~',.) %>% formula() -> formula01
lm02 <- update(lm01,formula01)
summary(lm02)
lm02 <- update(lm01,formula01,dat=dat03)
lm02 <- update(lm01,formula01,data=dat03)
summary(lm02)
lm02$call
lm03 <- update(lm02,.~(.)^2)
summary(lm03)
lm04 <- stepAIC(lm03,scope=list(lower=.~1,upper=.~(.)^2))
tidy(lm04)
plot(lm04)
savehistory(file = '2017_11_28_session_log.txt')