Version 0.24.0

What's Changed

• Snk cli refactor by @Wytamma in #67

Full Changelog: v0.23.2...v0.24.0

Version 0.23.2

Stop Snakemake v8.0.0 from being installed with python >= 3.11

Full Changelog: v0.23.1...v0.23.2

Version 0.23.1

workflow will now check if it's an editable workflow package installed by pip install . -e

Full Changelog: v0.23.0...v0.23.1

Version 0.23.0

I added back pipeline_dir_path to CLI so that it's back compatible.

Full Changelog: v0.22.5...v0.23.0

Version 0.22.5

Preserve the order of options as they are defined in the snk.yaml file.

Full Changelog: v0.22.4...v0.22.5

Version 0.22.4

Some minor bug fixes 🐛

Full Changelog: v0.22.3...v0.22.4

Version 0.22.3

✨ Allow pass SnkConfig to CLI

This means that you can create a cli without a snk.yaml by passing a SnkConfig class to snk.CLI.

🎨 logging to stderr

Logging defaults to stderr.

Full Changelog: v0.22.2...v0.22.3

Version 0.22.2

✨added additional_snakemake_args to snk config: A list of additional arguments to pass to snakemake.

Full Changelog: v0.22.1...v0.22.2

Version 0.22.1

• Improve snk list cli
• Minor updates

Full Changelog: v0.22.0...v0.22.1

Version 0.22.0

✨Create conda envs in parallel

A snakemake workflow that uses a lot of conda envs can take a long time to install as each env is created sequentially. Now running <workflow-name> env create will create all the conda envs in parallel (up to --workers at a time, defaults to number of cores). Single envs can be create with <workflow-name> env create <env-name>.

✨List commands now return tables

Running <workflow-name> env list/<workflow-name> profile list/<workflow-name> script list will now return a rich table.

✅ Improved testing

Better testing of environment commands.

Full Changelog: v0.21.2...v0.22.0