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pyproject.toml
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[build-system]
requires = ["setuptools", "setuptools-scm"]
build-backend = "setuptools.build_meta"
[project]
name = "aind_smartspim_stitch"
description = "Striping and stitching module for 3D teravoxel-sized microscopy images"
license = {text = "MIT"}
requires-python = ">=3.8"
authors = [
{name = "David Feng", email="[email protected]"},
{name = "Sharmishtaa Seshamani", email="[email protected]"},
{name = "Camilo Laiton", email="[email protected]"}
]
classifiers = [
"Programming Language :: Python :: 3"
]
dynamic = ["version", "readme"]
dependencies = [
'pandas',
'sphinx',
'tifffile < 2022.4.22',
'xarray_multiscale==1.1.0',
'argschema==3.0.4',
'mpi4py',
'bokeh==2.4.2',
'pint==0.20.1',
'dask[distributed]==2022.11.1',
'PyExifTool==0.5.5',
'tqdm==4.64.1',
'aind-ng-link@git+https://github.com/AllenNeuralDynamics/aind-ng-link.git',
'pystripe@git+https://github.com/AllenNeuralDynamics/pystripe.git@feature/output_format',
'ome-zarr@git+https://github.com/AllenNeuralDynamics/ome-zarr-py.git@feature/delayed-dask-poc',
'aicsimageio@git+https://github.com/camilolaiton/aicsimageio.git@feature/zarrwriter-multiscales-daskjobs',
'aind-data-schema==0.13.52',
'xmltodict==0.13.0',
'natsort==8.2.0',
'pims==0.6.1'
]
[project.optional-dependencies]
dev = [
'black',
'coverage',
'flake8',
'interrogate',
'isort',
'Sphinx',
'pygit2',
'parameterized',
'furo'
]
[project.urls]
homepage = "https://github.com/AllenNeuralDynamics/aind-smartspim-stitch"
documentation = "https://github.com/AllenNeuralDynamics/aind-smartspim-stitch"
repository = "https://github.com/AllenNeuralDynamics/aind-smartspim-stitch"
[tool.setuptools.packages.find]
where = ["code"]
[tool.setuptools.dynamic]
version = {attr = "aind_smartspim_stitch.__version__"}
readme = {file = ["README.md"]}
[tool.black]
line-length = 105
target_version = ['py36']
exclude = '''
(
/(
\.eggs # exclude a few common directories in the
| \.git # root of the project
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| build
| dist
)/
| .gitignore
)
'''
[tool.coverage.run]
omit = ["*__init__*"]
source = ["aind_smartspim_stitch", "utils", "zarr_converter", "tests"]
[tool.coverage.report]
exclude_lines = ["if __name__ == .__main__.:"]
fail_under = 100
[tool.isort]
line_length = 105
[tool.interrogate]
exclude = ["setup.py", "docs", "build"]
fail-under = 100