Update

Author: canergen

CODE_OF_CONDUCT.md

@@ -0,0 +1,18 @@
+FROM nvidia/cuda:12.4.0-runtime-ubuntu22.04
+FROM python:3.11 AS base
+
+RUN pip install --no-cache-dir uv
+
+RUN uv pip install --system --no-cache torch torchvision torchaudio "jax[cuda12]"
+RUN pip install --no-cache-dir --extra-index-url https://pypi.nvidia.com cuml-cu12 cudf-cu12 cugraph-cu12
+
+CMD ["/bin/bash"]
+
+FROM base AS build
+
+ENV POPV_PATH="/usr/local/lib/python3.11/site-packages/popv"
+
+COPY . ${POPV_PATH}
+
+ARG DEPENDENCIES=""
+RUN uv pip install --system "popv[${DEPENDENCIES}] @ ${POPV_PATH}"

Dockerfile

@@ -10,7 +10,7 @@ exclude = ["resources/*", "tests/*", "dataset/*"]
 
 [project]
 name = "popV"
-version = "0.5.1"
+version = "0.5.1post1"
 description = "Consensus prediction of cell type labels with popV"
 readme = "README.md"
 requires-python = ">=3.10"