chore: Merge branch 'main' into banner

Author: kelly-sovacool

README.md

@@ -1,6 +1,7 @@
+
 [![banner](images/banner.png)](https://frederick.cancer.gov/research/bioinformatics-and-computational-science/advanced-biomedical-computational-science)
 
-The [Advanced Biomedical Computational Science (ABCS)](https://frederick.cancer.gov/research/bioinformatics-and-computational-science/advanced-biomedical-computational-science) group is a part of the Bioinformatics and Computational Science (BACS) directorate at [Frederick National Laboratory for Cancer Research](https://frederick.cancer.gov/). ABCS provides bioinformatics, mathematical simulation and modeling, image analysis and visualization, nanoinformatics, proteomic analysis, data integration support for scientific projects through database maintenance and development, and scientific web application development support to the [National Cancer Institute](https://www.cancer.gov) (NCI) and [National Institutes of Health](https://www.nih.gov) (NIH) scientists and staff.
+The [Advanced Biomedical Computational Science (ABCS)](https://frederick.cancer.gov/research/bioinformatics-and-computational-science/advanced-biomedical-computational-science) group is a part of the Bioinformatics and Computational Science (BACS) directorate at [Frederick National Laboratory for Cancer Research](https://frederick.cancer.gov/). ABCS provides bioinformatics, mathematical simulation and modeling, image analysis and visualization, text mining, proteomic analysis, data integration support for scientific projects through database maintenance and development, and scientific web application development support to the [National Cancer Institute](https://www.cancer.gov) (NCI) and [National Institutes of Health](https://www.nih.gov) (NIH) scientists and staff.
 
 Repository categories: [Next-Generation Sequencing](ngs.md) 🧬, [Imaging AI](imaging-ai.md) 💻, [Statistics](statistics.md) 📊, [Training](training.md) 🎓, or [Other](other.md) 📚. 
 

docs/index.md

@@ -6,9 +6,9 @@ hide:
 
 The [Advanced Biomedical Computational Science (ABCS)](https://frederick.cancer.gov/research/bioinformatics-and-computational-science/advanced-biomedical-computational-science) group, part of the Bioinformatics and Computational Science (BACS) directorate at [Frederick National Laboratory for Cancer Research (FNLCR)](https://frederick.cancer.gov/), offers a wide range of services to support scientific projects for the [National Cancer Institute (NCI)](https://www.cancer.gov/) and [National Institutes of Health (NIH)](https://www.nih.gov/) scientists and staff.
 
-ABCS specializes in bioinformatics, mathematical simulation and modeling, image analysis and visualization, nanoinformatics, proteomic analysis, data integration, database maintenance and development, as well as scientific web application development.
+ABCS specializes in bioinformatics, mathematical simulation and modeling, image analysis and visualization, text mining, proteomic analysis, data integration, database maintenance and development, as well as scientific web application development.
 
-ABCS plays a crucial role in advancing research efforts by applying computational and data science, and artificial intelligence to problems in cancer, infectious disease, immunology, rare disease, HIV and other specialized areas in biomedical research at the NCI and NIH.
+ABCS plays a crucial role in advancing research efforts by applying computational and data science, and artificial intelligence to problems in cancer, infectious disease, immunology, rare disease, HIV and other specialized biomedical research areas at the NCI and NIH.
 
 Repository categories: [Next-Generation Sequencing](ngs.md) 🧬, [Imaging AI](imaging-ai.md) 💻, [Statistics](statistics.md) 📊, [Training](training.md) 🎓, or [Other](other.md) 📚. 
 

docs/other.md

@@ -7,17 +7,17 @@ hide:
 
 * [Non-B GFA](https://github.com/abcsFrederick/non-B_gfa)
     - gfa programs for Non-B site at NCI/FNLCR. gfa is a Suite of programs developed at NCI-Frederick/Frederick National Lab to find sequences associated with non-B DNA forming motifs.
-* [spacesavers2](https://github.com/CCBR/spacesavers2)
+* [spacesavers2](https://github.com/abcsFrederick/spacesavers2)
     - Spacesavers2 has a suite of tools to quickly crawl through a file system to identify duplicates, assess per-user or per-project disk usage and monitor disk allocation with a monthly report
-* [Dockers](https://github.com/CCBR/Dockers)
+* [Dockers](https://github.com/abcsFrederick/Dockers)
     - A large collection of 100+ CCBRs Docker recipes.
-* [permfix](https://github.com/CCBR/permfix)
+* [permfix](https://github.com/abcsFrederick/permfix)
     - A python toolkit to automatically fix user permissions on shared file systems. This can easily be setup as a cronjob.
-* [pyrkit](https://github.com/CCBR/pyrkit)
+* [pyrkit](https://github.com/abcsFrederick/pyrkit)
     - A tool to archive and co-locate NGS data with project-level, sample-level, and analysis-specific metadata prior to depositing in HPCDME.
-* [CCBR_SnakemakeTemplate](https://github.com/CCBR/CCBR_SnakemakeTemplate)
-    - Barebones framework for creating new snakemake workflows on BIOWULF
-* [CCBR_NextflowTemplate](https://github.com/CCBR/CCBR_NextflowTemplate)
-    - Barebones framework for creating new nextflow workflows on BIOWULF
-* [rNA](https://github.com/CCBR/rNA)
-    - R tool to generate comprehensive and interactive QC report for RENEE output.
+* [CCBR_SnakemakeTemplate](https://github.com/abcsFrederick/CCBR_SnakemakeTemplate)
+    - Barebones template for creating new Snakemake workflows
+* [CCBR_NextflowTemplate](https://github.com/abcsFrederick/CCBR_NextflowTemplate)
+    - Barebones template for creating new Nextflow workflows
+* [rNA](https://github.com/abcsFrederick/rNA)
+    - R tool to generate comprehensive and interactive QC report for RENEE output.