{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":726787203,"defaultBranch":"main","name":"COPDgene-CT-registration","ownerLogin":"abdel-habib","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-12-03T12:02:50.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/67197269?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1701605078.0","currentOid":""},"activityList":{"items":[{"before":"ae91a2223d8ce19bee32f864fa478a3ef7eb7cfb","after":"5138807bba6d14c9037e916efc5124cd32456bc2","ref":"refs/heads/main","pushedAt":"2024-01-05T15:33:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Create 4DCT_DIR_Lab_Registration_Challenge_Report-HABIB.pdf","shortMessageHtmlLink":"Create 4DCT_DIR_Lab_Registration_Challenge_Report-HABIB.pdf"}},{"before":"6c1894caea1e58fdbddefa37ce99254aaec8a269","after":"ae91a2223d8ce19bee32f864fa478a3ef7eb7cfb","ref":"refs/heads/main","pushedAt":"2024-01-03T09:51:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"71d1d6a4709e884ba8601e1a162f6d056f02ab8a","after":"6c1894caea1e58fdbddefa37ce99254aaec8a269","ref":"refs/heads/main","pushedAt":"2024-01-03T09:50:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"98b41ef2eae52aff0be592a47ae316fafabcca86","after":"71d1d6a4709e884ba8601e1a162f6d056f02ab8a","ref":"refs/heads/main","pushedAt":"2024-01-03T09:49:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"export only normalization results","shortMessageHtmlLink":"export only normalization results"}},{"before":"6025e76db1369c0a2463ebf4a800b86fc3ed4371","after":"98b41ef2eae52aff0be592a47ae316fafabcca86","ref":"refs/heads/main","pushedAt":"2024-01-02T17:21:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"improving results and best parameter file to reach mean TRE = 1.588","shortMessageHtmlLink":"improving results and best parameter file to reach mean TRE = 1.588"}},{"before":"a0de3bc94c9833561df847c11d390f7caf1b570d","after":"6025e76db1369c0a2463ebf4a800b86fc3ed4371","ref":"refs/heads/main","pushedAt":"2024-01-01T10:27:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"best parameter files","shortMessageHtmlLink":"best parameter files"}},{"before":"c76c3e6e1294cf5223eef802ba51ccc3e7665ad4","after":"a0de3bc94c9833561df847c11d390f7caf1b570d","ref":"refs/heads/main","pushedAt":"2023-12-31T23:12:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"refactor","shortMessageHtmlLink":"refactor"}},{"before":"043ba7eef38968e800fb16482078132130bbd915","after":"c76c3e6e1294cf5223eef802ba51ccc3e7665ad4","ref":"refs/heads/main","pushedAt":"2023-12-31T21:52:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"9d227b04b222c9726d93fdcce83b4a16f1e35d56","after":"043ba7eef38968e800fb16482078132130bbd915","ref":"refs/heads/main","pushedAt":"2023-12-31T21:51:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"edc25fb56ab97f47dc95d7ed995c495729e8a49a","after":"9d227b04b222c9726d93fdcce83b4a16f1e35d56","ref":"refs/heads/main","pushedAt":"2023-12-31T21:50:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"add seg banner","shortMessageHtmlLink":"add seg banner"}},{"before":"5a917a9e2be6c110e2564c156a8a59cff747b050","after":"edc25fb56ab97f47dc95d7ed995c495729e8a49a","ref":"refs/heads/main","pushedAt":"2023-12-31T21:44:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"2857e4782464f3f3f13dac8eb9673493c8fce7e2","after":"5a917a9e2be6c110e2564c156a8a59cff747b050","ref":"refs/heads/main","pushedAt":"2023-12-31T21:15:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/abdel-habib/COPDgene-CT-registration","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/abdel-habib/COPDgene-CT-reg…"}},{"before":"35a075b20c5d92a7ad6be7a97391a00da903b17c","after":"2857e4782464f3f3f13dac8eb9673493c8fce7e2","ref":"refs/heads/main","pushedAt":"2023-12-31T21:14:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"8b22e79c7728fc873c74b6f7965a7893a98929c5","after":"35a075b20c5d92a7ad6be7a97391a00da903b17c","ref":"refs/heads/main","pushedAt":"2023-12-31T21:13:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"update seg figure","shortMessageHtmlLink":"update seg figure"}},{"before":"a1073f8d3941cc4e85cbc44c5fed06055945bf9c","after":"8b22e79c7728fc873c74b6f7965a7893a98929c5","ref":"refs/heads/main","pushedAt":"2023-12-31T21:04:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"more figures for report","shortMessageHtmlLink":"more figures for report"}},{"before":"bb654b73f18cf51df29605e3bf6cb2b2bc745906","after":"a1073f8d3941cc4e85cbc44c5fed06055945bf9c","ref":"refs/heads/main","pushedAt":"2023-12-30T11:58:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"fix pre-processing body segmentation threshold to match lung segmentation, refactor","shortMessageHtmlLink":"fix pre-processing body segmentation threshold to match lung segmenta…"}},{"before":"3f3fc6d3773c4d7e0176843032c60917e1295bc9","after":"bb654b73f18cf51df29605e3bf6cb2b2bc745906","ref":"refs/heads/main","pushedAt":"2023-12-30T11:56:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"refactoring","shortMessageHtmlLink":"refactoring"}},{"before":"7ac8f38f9aeea74cfd417a9d3a68df5e5d2d91db","after":"3f3fc6d3773c4d7e0176843032c60917e1295bc9","ref":"refs/heads/main","pushedAt":"2023-12-30T11:39:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Plots and figures","shortMessageHtmlLink":"Plots and figures"}},{"before":"61ceeaaffa1b9c2405d0bad7bb85496a3e53d766","after":"7ac8f38f9aeea74cfd417a9d3a68df5e5d2d91db","ref":"refs/heads/main","pushedAt":"2023-12-29T05:51:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"plotting report figures","shortMessageHtmlLink":"plotting report figures"}},{"before":"bd8c0280b1252ba0e7597628cc7d41ffc32399e8","after":"61ceeaaffa1b9c2405d0bad7bb85496a3e53d766","ref":"refs/heads/main","pushedAt":"2023-12-28T13:45:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"fill_holes_before_trachea_removal only for copd2 improved overall TRE mean to 1.70 using Par003.bs-R6-ug.txt","shortMessageHtmlLink":"fill_holes_before_trachea_removal only for copd2 improved overall TRE…"}},{"before":"30c3610e4ec80d1fe6aa770426d542715bea7446","after":"bd8c0280b1252ba0e7597628cc7d41ffc32399e8","ref":"refs/heads/main","pushedAt":"2023-12-27T07:41:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"update segmentation, results improved to Mean TRE 1.915 for Par0003.bs-R6-ug","shortMessageHtmlLink":"update segmentation, results improved to Mean TRE 1.915 for Par0003.b…"}},{"before":"1edb58360d0c45e5f99e211abe8e1199303576bb","after":"30c3610e4ec80d1fe6aa770426d542715bea7446","ref":"refs/heads/main","pushedAt":"2023-12-27T06:55:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"improve landmarks and masks plotting - plots the mask in red, overlayed on the image, with its landmarks","shortMessageHtmlLink":"improve landmarks and masks plotting - plots the mask in red, overlay…"}},{"before":"30ba52eb938da2c9cea9d52b933faed17845cf8c","after":"1edb58360d0c45e5f99e211abe8e1199303576bb","ref":"refs/heads/main","pushedAt":"2023-12-22T19:02:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"preprocessing script + run","shortMessageHtmlLink":"preprocessing script + run"}},{"before":"f0ba81edcd38fa5a54dc4de8bf981cc6fd363123","after":"30ba52eb938da2c9cea9d52b933faed17845cf8c","ref":"refs/heads/main","pushedAt":"2023-12-21T23:30:04.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update 5_Preprocessing.ipynb","shortMessageHtmlLink":"Update 5_Preprocessing.ipynb"}},{"before":"fdd6e924668d50ccec631aadf94a1e2a305ae342","after":"f0ba81edcd38fa5a54dc4de8bf981cc6fd363123","ref":"refs/heads/main","pushedAt":"2023-12-20T20:43:12.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"explore denoising approaches","shortMessageHtmlLink":"explore denoising approaches"}},{"before":"3534fd5d0f828dae1700612346a4b271983ca6c4","after":"fdd6e924668d50ccec631aadf94a1e2a305ae342","ref":"refs/heads/main","pushedAt":"2023-12-20T12:28:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"fixed landmarks plotting on the mask","shortMessageHtmlLink":"fixed landmarks plotting on the mask"}},{"before":"33f9b1c451e688f5609cfba102a89f115c33b308","after":"3534fd5d0f828dae1700612346a4b271983ca6c4","ref":"refs/heads/main","pushedAt":"2023-12-19T16:17:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"update elastix versions for scripts","shortMessageHtmlLink":"update elastix versions for scripts"}},{"before":"fd1fb09dbede5565800451ab75d9b7961c88bf87","after":"33f9b1c451e688f5609cfba102a89f115c33b308","ref":"refs/heads/main","pushedAt":"2023-12-17T17:20:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Handles creating a batch of scripts for multiple params files at once","shortMessageHtmlLink":"Handles creating a batch of scripts for multiple params files at once"}},{"before":"b5268510fdf806b75297b956fe797ea6a8ad3071","after":"fd1fb09dbede5565800451ab75d9b7961c88bf87","ref":"refs/heads/main","pushedAt":"2023-12-17T14:30:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b034d615381df5e6e17cef58983e3d8c3c280d11","after":"b5268510fdf806b75297b956fe797ea6a8ad3071","ref":"refs/heads/main","pushedAt":"2023-12-16T12:17:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abdel-habib","name":"ABDELRAHMAN HABIB","path":"/abdel-habib","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67197269?s=80&v=4"},"commit":{"message":"experimenting landmarks visualization","shortMessageHtmlLink":"experimenting landmarks visualization"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMS0wNVQxNTozMzowNC4wMDAwMDBazwAAAAPYr12b","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMS0wNVQxNTozMzowNC4wMDAwMDBazwAAAAPYr12b","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMi0xNlQxMjoxNzoxMi4wMDAwMDBazwAAAAPL1sVS"}},"title":"Activity · abdel-habib/COPDgene-CT-registration"}