Fix some broken deps

Author: asl

Diff for: src/common/modules/path_extend/CMakeLists.txt

@@ -25,6 +25,6 @@ add_library(path_extend STATIC
             scaffolder2015/connection_condition2015.cpp 
             scaffolder2015/path_polisher.cpp)
 
-target_link_libraries(path_extend assembly_graph ssw configs)
+target_link_libraries(path_extend modules assembly_graph ssw configs)
 
 

Diff for: src/projects/hpcspades/CMakeLists.txt

@@ -49,7 +49,7 @@ add_subdirectory(mpi)
 add_library(spades-stages-hpc STATIC distance_estimation_mpi.cpp)
 
 set(HPCSPADES_SRC pipeline.cpp ../../projects/spades/series_analysis.cpp ../../projects/mts/contig_abundance.cpp)
-set(HPCSPADES_LIB spades-stages-hpc spades-stages graphio common_modules paired_info_mpi stages-mpi alignment_mpi pipeline_mpi utils_mpi ${COMMON_LIBRARIES})
+set(HPCSPADES_LIB spades-stages-hpc spades-stages paired_info_mpi stages-mpi alignment_mpi pipeline_mpi utils_mpi graphio common_modules ${COMMON_LIBRARIES})
 
 add_executable(spades-hpc main_mpi.cpp ${HPCSPADES_SRC})