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This repository contains the slides and case study from the presentation by Stephanie Hicks at the Spring 2017 Nanocourse titled 'Single-Cell Sequencing: experimental design, analysis, and practical applications' at Harvard Medical School.

  • Presentation slides
  • Case study using R/Bioconductor to explore scRNA-Seq data, apply quality control filters, estimate cell-specific normalization factors, and remove a batch effect.