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Complex_2ormoreindels_framerestoring_NIST2.19.ucsccoding.vcf
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Complex_2ormoreindels_framerestoring_NIST2.19.ucsccoding.vcf
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##fileformat=VCFv4.1
##phasing=none
##reference=file:///projects/scratch-data-backup/justin.zook/references/human_g1k_v37.fasta
##source=SelectVariants
##variants_justified=left
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##FILTER=<ID=Uncertain,Description="Uncertain genotype due to reason in filter INFO field">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Total read depth summed across all datasets, excluding MQ0 reads">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Net Genotype quality across all datasets, defined as difference between most likely and next most likely genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Net Genotype across all datasets">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods summed across all unfiltered datasets for genotypes as defined in the VCF specification">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878
5 139931628 . A AGT 27400 PASS . GT:DP:GQ:PL 1/1:620:99:27566,2025,166
5 139931629 . C CG 15693 PASS . GT:DP:GQ:PL 1/1:360:99:15693,1056,0
6 90577706 . TG T 13776 PASS . GT:DP:GQ:PL 0/1:952:99:13776,0,142066
6 90577711 . TCTTTGCCCAGACATGGA T 14066 PASS . GT:DP:GQ:PL 0/1:1174:99:14138,72,148561
11 76751541 . CT C 18353 PASS . GT:DP:GQ:PL 1/1:502:99:18353,1318,0
11 76751584 . CT C 23332 PASS . GT:DP:GQ:PL 1/1:577:99:23332,1565,0
11 76751603 . CT C 24241 PASS . GT:DP:GQ:PL 1/1:550:99:24241,1704,0
14 29261307 . A AC 7916 PASS . GT:DP:GQ:PL 0/1:728:99:7916,0,12677
14 29261309 . A AAC 10291 PASS . GT:DP:GQ:PL 0/1:664:99:10291,0,23349
14 74060508 . C A 7297 PASS . GT:DP:GQ:PL 0/1:894:99:7297,0,17667
14 74060511 . T TTCAA 11652 PASS . GT:DP:GQ:PL 0/1:913:99:11727,75,88525
14 74060513 . GCTTA G 11596 PASS . GT:DP:GQ:PL 0/1:964:99:11671,75,89354
19 2341059 . G A 17704 PASS . GT:DP:GQ:PL 1/1:603:99:17704,1568,0
19 2341060 . T C 17582 PASS . GT:DP:GQ:PL 1/1:601:99:17582,1547,0
19 2341093 . CCTCCCTGG C 8459 PASS . GT:DP:GQ:PL 0/1:463:99:8459,0,29571
19 2341102 . AG A 8717 PASS . GT:DP:GQ:PL 0/1:449:99:8717,0,30239