periodic_tests.yml

name: Periodic Tests

on:
  schedule:
    # every day at 1:30 AM UTC
    - cron:  "30 1 * * *"
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}
  cancel-in-progress: true

jobs:
  check-manifest:
    runs-on: ubuntu-22.04

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Run check-manifest
        uses: pre-commit/action@v3.0.1
        with:
          extra_args: check-manifest --hook-stage manual

  pre-commit:
    runs-on: ubuntu-22.04

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Run pre-commit
        uses: pre-commit/action@v3.0.1
        with:
          extra_args: --all-files

  run-notebook-examples:
    runs-on: ubuntu-22.04

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Use numba cache to set env variables but not restore cache
        uses: ./.github/actions/numba_cache
        with:
          cache_name: "run-notebook-examples"
          runner_os: ${{ runner.os }}
          python_version: "3.10"
          restore_cache: "false"

      - name: Install dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,binder,dev]

      - name: Run example notebooks
        run: .github/utilities/run_examples.sh false
        shell: bash

      - name: Save new cache
        uses: actions/cache/save@v4
        with:
          path: ${{ github.workspace }}/.numba_cache
          # Save cache with the current date (ENV set in numba_cache action)
          key: numba-run-notebook-examples-${{ runner.os }}-3.10-${{ env.CURRENT_DATE }}

  test-no-soft-deps:
    runs-on: ubuntu-22.04

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Use numba cache to set env variables but not restore cache
        uses: ./.github/actions/numba_cache
        with:
          cache_name: "test-no-soft-deps"
          runner_os: ${{ runner.os }}
          python_version: "3.10"
          restore_cache: "false"

      - name: Install aeon and dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[dev]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: python -m pytest -n logical

      - name: Save new cache
        uses: actions/cache/save@v4
        with:
          path: ${{ github.workspace }}/.numba_cache
          # Save cache with the current date (ENV set in numba_cache action)
          key: numba-test-no-soft-deps-${{ runner.os }}-3.10-${{ env.CURRENT_DATE }}

  pytest:
    runs-on: ${{ matrix.os }}

    strategy:
      fail-fast: false
      matrix:
        os: [ ubuntu-22.04, macOS-14, windows-2022 ]
        python-version: [ "3.9", "3.10", "3.11", "3.12" ]

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Use numba cache to set env variables but not restore cache
        uses: ./.github/actions/numba_cache
        with:
          cache_name: "pytest"
          runner_os: ${{ runner.os }}
          python_version: ${{ matrix.python-version }}
          restore_cache: "false"

      - name: Install aeon and dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,dev]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: python -m pytest -n logical

      - name: Save new cache
        uses: actions/cache/save@v4
        with:
          path: ${{ github.workspace }}/.numba_cache
          # Save cache with the current date (ENV set in numba_cache action)
          key: numba-pytest-${{ runner.os }}-${{ matrix.python-version}}-${{ env.CURRENT_DATE }}

  codecov:
    runs-on: ubuntu-22.04

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Disable Numba JIT
        run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV

      - name: Install aeon and dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,unstable_extras,dev]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: python -m pytest -n logical --cov=aeon --cov-report=xml --timeout 1800

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}