Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1) #461

Open
YSYL-FSH opened this issue Jul 1, 2024 · 1 comment
Open

Comments

@YSYL-FSH
Copy link

YSYL-FSH commented Jul 1, 2024

hi

Why did the function suddenly stop working?

<--
Please explain what the bug is, and if possible, the steps to reproduce it.
scenicOptions <- initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)
Motif databases selected:
hg19-500bp-upstream-7species.mc9nr.feather
hg19-tss-centered-10kb-7species.mc9nr.feather
[1] "The index column 'features' is not available in the file."
[1] "The index column 'features' is not available in the file."
Error in eval(as.name(motifAnnotName)) :
object 'motifAnnotations_hgnc' not found
In addition: Warning message:
In initializeScenic(org = "hgnc", dbDir = "cisTarget_databases", :
It was not possible to load the following databses; check whether they are downloaded correctly:
hg19-500bp-upstream-7species.mc9nr.feather
hg19-tss-centered-10kb-7species.mc9nr.feather
Providing a minimal example or a mini-dataset to reproduce the error will help a lot!
-->

@Mancang-Yu
Copy link

Hi,have you fixed this problem? I meet the same problem.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants