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modules.json
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modules.json
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{
"name": "nf-core/cutandrun",
"homePage": "https://github.com/nf-core/cutandrun",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bedtools/bamtobed": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bedtools/complement": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bedtools/genomecov": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bedtools/intersect": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bedtools/merge": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "363a40e3af1f2dec0545379f4ede49c1fac089f1",
"installed_by": ["modules"]
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"deeptools/computematrix": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"deeptools/multibamsummary": {
"branch": "master",
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"installed_by": ["modules"]
},
"deeptools/plotcorrelation": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"deeptools/plotfingerprint": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
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},
"deeptools/plotheatmap": {
"branch": "master",
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"installed_by": ["modules"]
},
"deeptools/plotpca": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
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"installed_by": ["modules"]
},
"macs2/callpeak": {
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"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules", "bam_stats_samtools"]
},
"samtools/idxstats": {
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"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["modules", "bam_stats_samtools"]
},
"samtools/index": {
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"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
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},
"samtools/stats": {
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"installed_by": ["modules", "bam_stats_samtools"]
},
"samtools/view": {
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"installed_by": ["modules"]
},
"seacr/callpeak": {
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},
"tabix/bgziptabix": {
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},
"ucsc/bedclip": {
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},
"ucsc/bedgraphtobigwig": {
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},
"untar": {
"branch": "master",
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"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
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"git_sha": "7c8eeb2b37a6c6d3ffba0aef55ff60c8718c0ba6",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
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"installed_by": ["bam_sort_stats_samtools"]
}
}
}
}
}
}