Skip to content
This repository was archived by the owner on Jan 26, 2025. It is now read-only.

Commit cbf584c

Browse files
committed
first mapping automation
1 parent 816619d commit cbf584c

26 files changed

+511
-0
lines changed

concepts/Adrenaline_dosage.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: ''
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '221289'
11+
schema: mimiciv_icu
12+
table: inputevents
13+
source: mimiciv
14+
unit: ''
15+
name: Adrenaline_dosage
16+
unit: ug/kg/min
17+
upper_limit: 300

concepts/Age.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Patient's age
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: ''
11+
schema: mimiciv_derived
12+
table: age
13+
source: mimiciv
14+
unit: ''
15+
name: Age
16+
unit: years
17+
upper_limit: 300

concepts/AirwayPlateauPressure.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Airway Plateau Pressure of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '224696'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: AirwayPlateauPressure
16+
unit: mmHg
17+
upper_limit: 300

concepts/BodyHeight.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Height of a patient's body
2+
identifiers:
3+
loinc: 8302-2
4+
snomed: '1153637007'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '226730'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: BodyHeight
16+
unit: cm
17+
upper_limit: 300

concepts/BodyTemperature.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Temperature of a patient's body, irrespective of site
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '223762'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: BodyTemperature
16+
unit: "\xB0C"
17+
upper_limit: 300

concepts/BodyWeight.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Weight of a patien's body
2+
identifiers:
3+
loinc: 29463-7
4+
snomed: '27113001'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '224639'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: BodyWeight
16+
unit: kg
17+
upper_limit: 300

concepts/BreathingRate.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Actual breathing rate of patient
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '224690'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: BreathingRate
16+
unit: 1/min
17+
upper_limit: 300
+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: ''
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220615'
11+
schema: mimic_hosp
12+
table: labevents
13+
source: mimiciv
14+
unit: ''
15+
name: Creatinine_absolute_serum
16+
unit: mg/dl
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Diastolic arterial pressure of a patient
2+
identifiers:
3+
loinc: 76213-8
4+
snomed: '251073000'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220051'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: DiastolicBloodPressue_Arterial_Invasive
16+
unit: mmHg
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Diastolic venous pressure of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: '251074006'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220180'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: DiastolicBloodPressue_Arterial_noninvasive
16+
unit: mmHg
17+
upper_limit: 300

concepts/Dobutamine_dosage.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: ''
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '221653'
11+
schema: mimiciv_icu
12+
table: inputevents
13+
source: mimiciv
14+
unit: ''
15+
name: Dobutamine_dosage
16+
unit: ug/kg/min
17+
upper_limit: 300

concepts/FiO2.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Inspired oxygen concentration of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '223835'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: FiO2
16+
unit: 1/1
17+
upper_limit: 300

concepts/Gender.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Patient's gender
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '226228'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: Gender
16+
unit: ''
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Mean arterial pressure of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: '251075007'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220052'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: MeanBloodPressue_Arterial_Invasive
16+
unit: mmHg
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Diastolic venous pressure of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: '174255007'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220181'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: MeanBloodPressue_Arterial_Noninvasive
16+
unit: mmHg
17+
upper_limit: 300

concepts/Norepinephrine_dosage.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: ''
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '221906'
11+
schema: mimiciv_icu
12+
table: inputevents
13+
source: mimiciv
14+
unit: ''
15+
name: Norepinephrine_dosage
16+
unit: ug/kg/min
17+
upper_limit: 300
+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Oxygen Saturation, irrespective of sample site
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220227'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: OxygenSaturation_Peripheral
16+
unit: '%'
17+
upper_limit: 300

concepts/PEEP.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Positive end-expiratory pressure
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '224700'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: PEEP
16+
unit: cm H2O
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Systolic arterial pressure of a patient
2+
identifiers:
3+
loinc: 76215-3
4+
snomed: '251071003'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220050'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: SystolicBloodPressure_Arterial_Invasive
16+
unit: mmHg
17+
upper_limit: 300
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Systolic venous pressure of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: '251070002'
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '220179'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: SystolicBloodPressure_Arterial_noninvasive
16+
unit: mmHg
17+
upper_limit: 300

concepts/TidalVolume.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Actual tidal volume of a patient
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: '224685'
11+
schema: mimiciv_icu
12+
table: chartevents
13+
source: mimiciv
14+
unit: ''
15+
name: TidalVolume
16+
unit: ml
17+
upper_limit: 300

concepts/UrineVolume.yml

+17
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
1+
description: Urine Volume measured at a certain point in time
2+
identifiers:
3+
loinc: ''
4+
snomed: ''
5+
lower_limit: 0
6+
mapper:
7+
- klass: MimicObservationMapper
8+
params:
9+
constraints:
10+
itemid: ''
11+
schema: mimiciv_derived
12+
table: urineoutput
13+
source: mimiciv
14+
unit: ''
15+
name: UrineVolume
16+
unit: ml
17+
upper_limit: 300

0 commit comments

Comments
 (0)