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Along the length of the model coordinates of the bodies are set as the multiples of the model resolution so try to click close as much as possible to the end of the profile. For example if you have 5km resolution then if you click at 97.4 code will take it as 95 but if you click at 97.9 it will take it as 100km .
This should fix this issue.
I am unable to add any nodes to modify geometry. Error like "Exception in Tkinter callback and AttributeError: 'NoneType' object has no attribute 'all'" are coming. I also tried to look for etsconfig.py file but I am not getting this folder in my usr/lib/python2.7/dist-pakckage/traits/etsconfig....I do not see any traits and etsconfig in this suggested path...although program is running perfectly...
added body does not close properly at the end of the profile.
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