From e4ebfb91017b1ecf6493bf52b6fa4a75680a1794 Mon Sep 17 00:00:00 2001
From: Adrian Hill <adrian.hill@mailbox.org>
Date: Tue, 31 Jan 2023 18:23:44 +0100
Subject: [PATCH] Fix documentation

---
 docs/source/conf.py                  |  3 +--
 docs/source/index.rst                |  1 -
 docs/source/modules/analyzer.rst     |  7 -------
 docs/source/modules/applications.rst | 10 ----------
 docs/source/modules/tools.rst        |  7 -------
 docs/source/modules/utils.rst        |  4 ++--
 src/innvestigate/backend/graph.py    |  3 +++
 7 files changed, 6 insertions(+), 29 deletions(-)
 delete mode 100644 docs/source/modules/applications.rst

diff --git a/docs/source/conf.py b/docs/source/conf.py
index 4a7763a3..5e53a5d9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -27,7 +27,6 @@
 # The full version, including alpha/beta/rc tags
 release = "not set"
 
-
 # -- General configuration ---------------------------------------------------
 
 # If your documentation needs a minimal Sphinx version, state it here.
@@ -59,7 +58,7 @@
 #
 # This is also used if you do content translation via gettext catalogs.
 # Usually you set "language" from the command line for these cases.
-language = None
+language = "en"
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
diff --git a/docs/source/index.rst b/docs/source/index.rst
index 35c89bc5..b88dabcc 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -23,7 +23,6 @@ API reference
 
   modules/innvestigate
   modules/analyzer
-  modules/applications
   modules/tools
   modules/utils
 
diff --git a/docs/source/modules/analyzer.rst b/docs/source/modules/analyzer.rst
index ea89db56..b4c0a1b5 100644
--- a/docs/source/modules/analyzer.rst
+++ b/docs/source/modules/analyzer.rst
@@ -24,13 +24,6 @@ Layer-wise relevance propagation
    :undoc-members:
 
 
-Pattern methods
----------------
-
-.. automodule:: innvestigate.analyzer.pattern_based
-   :members:
-   :undoc-members:
-
 Deep Taylor
 ---------------
 
diff --git a/docs/source/modules/applications.rst b/docs/source/modules/applications.rst
deleted file mode 100644
index a094190c..00000000
--- a/docs/source/modules/applications.rst
+++ /dev/null
@@ -1,10 +0,0 @@
-innvestigate.applications
-=========================
-
-Imagenet
----------------
-
-.. automodule:: innvestigate.applications.imagenet
-   :members:
-   :undoc-members:
-
diff --git a/docs/source/modules/tools.rst b/docs/source/modules/tools.rst
index d2ee81d4..3c555892 100644
--- a/docs/source/modules/tools.rst
+++ b/docs/source/modules/tools.rst
@@ -1,13 +1,6 @@
 innvestigate.tools
 ==================
 
-Pattern Computation
----------------
-
-.. automodule:: innvestigate.tools.pattern
-   :members: PatternComputer
-   :undoc-members: BasePattern
-
 Perturbation Analysis
 ---------------
 
diff --git a/docs/source/modules/utils.rst b/docs/source/modules/utils.rst
index e5a38a30..7e9ec5c3 100644
--- a/docs/source/modules/utils.rst
+++ b/docs/source/modules/utils.rst
@@ -15,6 +15,6 @@ Visualizations
 Keras-Utils
 ------------
 
-.. automodule:: innvestigate.utils.keras.graph
-   :members: copy_layer, copy_layer_wo_act, model_wo_softmax, get_model_execution_graph, reverse_model
+.. automodule:: innvestigate.backend.graph
+   :members: copy_layer, copy_layer_wo_activation, model_wo_softmax, get_model_execution_graph, reverse_model
    :undoc-members:
diff --git a/src/innvestigate/backend/graph.py b/src/innvestigate/backend/graph.py
index c8b6bed8..f81b3b0c 100644
--- a/src/innvestigate/backend/graph.py
+++ b/src/innvestigate/backend/graph.py
@@ -1000,6 +1000,7 @@ def reverse_model(
     """
     Reverses a Keras model based on the given reverse functions.
     Returns two values:
+
     1. the reverted tensors for the according model inputs.
     2. If `return_all_reversed_tensors` is true, a dictionary of all reversed tensors,
         otherwise None.
@@ -1008,10 +1009,12 @@ def reverse_model(
     :param reverse_mappings: Either a callable that matches layers to
       mappings or a dictionary with layers as keys and mappings as values.
       Allowed as mapping forms are:
+
           * A function of form (A) f(Xs, Ys, reversed_Ys, reverse_state).
           * A function of form f(B) f(layer, reverse_state) that returns
             a function of form (A).
           * A :class:`ReverseMappingBase` subclass.
+
     :param default_reverse_mapping: A function that reverses layers for
       which no mapping was given by param "reverse_mappings".
     :param head_mapping: Map output tensors to new values before passing