error in running imt_gsea with geneset except 'lake' and 'pooled'

[YufeiChenGithub]

I run imt_gsea in linux command line:

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g Allen_Brain_Atlas_up -o ~/cyf/IMAGEGENE/AHBA
2024-06-06 18:07:16,803: Performing GSEA.
2024-06-06 18:07:16,814 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value!
已杀死

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g GO_Biological_Process_2023 -o ~/cyf/IMAGEGENE/AHBA
2024-06-07 15:22:33,474: Performing GSEA.
2024-06-07 15:22:33,572 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value!
已杀死

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g MSigDB_Computational -o ~/cyf/IMAGEGENE/AHBA
2024-06-07 15:41:39,947: Performing GSEA.
2024-06-07 15:41:40,067 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value!
已杀死

[lyhoo23618-csu]

Hi,

I encountered the same error and failed to adress it. I noticed that the geneste databases, except for 'lake' and 'pooled', need to be fetched from the Gesapy package. Could there be an issue with this package?

Best regards,
Hao