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CHANGELOG.md

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1.5.4 (2024-03-13)

  • Add ImzMLParser.spectrum_mode field.
  • Fix a bug in parsing userParam value.
  • Replaced broken links in README file
  • Updated GitHub Actions workflow

1.5.3 (2022-11-09)

  • Fixing a bug in the documentation.

1.5.2 (2022-07-21)

  • Change url for imzML 1.1.0 specification.

1.5.1 (2021-08-16)

  • Fix code that causes SyntaxWarning in Python 3.8+
  • Change ImzmlWriter to output "linescan left right" instead of "line scan left right", to match the ontology

1.5.0 (2021-07-19)

  • Handle mismatched accession for "positive scan"
  • Default ImzMLParser to ElementTree if no parse_lib is specified
  • Add ImzMLParser.polarity field

1.4.1 (2020-10-26)

  • Fixed new modules missing from package

1.4.0 (2020-10-23)

  • Add support for parsing all ImzML metadata
    • Global metadata is always included through ImzMLParser.metadata
    • Per-spectrum metadata requires include_spectra_metadata='full' or include_spectra_metadata=[... list of accessions] to be passed to ImzMLParser.
  • Handle mismatched accessions for specifying data types of binary arrays

1.3.0 (2019-05-24)

  • Add PortableSpectrumReader, which holds the minimal subset of ImzMLParser needed to read m/z and intensity data from the .ibd file, and is able to be pickled.

1.2.6 (2019-04-23)

  • Changed ImzMLParser.getspectrum to return NumPy arrays instead of Python lists

1.2.5 (2019-04-10)

  • Added parse_lib parameter to ImzMLParser, allowing ElementTree to be used instead of lxml

1.2.4 (2019-01-23)

  • Support MS:1000519 and MS:1000522 accessions for specifying integer binary data types

1.2.3 (2018-07-02)

  • Support ImzMLParser detecting .ibd files with a case-insensitive search