Fails to process S3 files with a comma in the name

[Dennitz]

🐛 Describe the bug

When I do

python -m olmocr.pipeline s3://my-bucket/workspace --pdfs s3://my-bucket/inputs/*.pdf

any PDF files containing a comma in their name won't get processed.

Say for example a file is named test, ab.pdf, then there is this warning in the logs:

WARNING:olmocr.s3_utils:Attempt 8 failed to get_s3_bytes for  ab.pdf: s3_path must start with s3://, gs://, or weka://.

Versions

Python 3.11.11
aiohappyeyeballs==2.4.6
aiohttp==3.11.13
aiosignal==1.3.2
annotated-types==0.7.0
anthropic==0.47.2
anyio==4.8.0
asttokens==3.0.0
attrs==25.1.0
beaker-py==1.34.1
bleach==6.2.0
boto3==1.37.1
botocore==1.37.1
cached_path==1.6.7
cachetools==5.5.2
certifi==2025.1.31
cffi==1.17.1
charset-normalizer==3.4.1
click==8.1.8
cloudpickle==3.1.1
compressed-tensors==0.8.0
cryptography==44.0.1
cuda-bindings==12.8.0
cuda-python==12.8.0
datasets==3.3.2
decorator==5.2.1
decord==0.6.0
dill==0.3.8
diskcache==5.6.3
distro==1.9.0
docker==7.1.0
einops==0.8.1
executing==2.2.0
fastapi==0.115.8
filelock==3.17.0
flashinfer==0.1.6+cu124torch2.4
frozenlist==1.5.0
fsspec==2024.12.0
ftfy==6.3.1
fuzzysearch==0.7.3
gguf==0.10.0
google-api-core==2.24.1
google-auth==2.38.0
google-cloud-core==2.4.2
google-cloud-storage==2.19.0
google-crc32c==1.6.0
google-resumable-media==2.7.2
googleapis-common-protos==1.68.0
h11==0.14.0
hf_transfer==0.1.9
httpcore==1.0.7
httptools==0.6.4
httpx==0.28.1
huggingface-hub==0.27.1
idna==3.10
importlib_metadata==8.6.1
iniconfig==2.0.0
interegular==0.3.3
ipython==8.32.0
jedi==0.19.2
Jinja2==3.1.5
jiter==0.8.2
jmespath==1.0.1
jsonschema==4.23.0
jsonschema-specifications==2024.10.1
lark==1.2.2
lingua-language-detector==2.0.2
litellm==1.61.16
llvmlite==0.44.0
lm-format-enforcer==0.10.10
markdown-it-py==3.0.0
markdown2==2.5.3
MarkupSafe==3.0.2
matplotlib-inline==0.1.7
mdurl==0.1.2
mistral_common==1.5.3
modelscope==1.23.1
mpmath==1.3.0
msgpack==1.1.0
msgspec==0.19.0
multidict==6.1.0
multiprocess==0.70.16
nest-asyncio==1.6.0
networkx==3.4.2
numba==0.61.0
numpy==1.26.4
nvidia-cublas-cu12==12.4.5.8
nvidia-cuda-cupti-cu12==12.4.127
nvidia-cuda-nvrtc-cu12==12.4.127
nvidia-cuda-runtime-cu12==12.4.127
nvidia-cudnn-cu12==9.1.0.70
nvidia-cufft-cu12==11.2.1.3
nvidia-curand-cu12==10.3.5.147
nvidia-cusolver-cu12==11.6.1.9
nvidia-cusparse-cu12==12.3.1.170
nvidia-cusparselt-cu12==0.6.2
nvidia-ml-py==12.570.86
nvidia-nccl-cu12==2.21.5
nvidia-nvjitlink-cu12==12.4.127
nvidia-nvtx-cu12==12.4.127
-e git+https://github.com/allenai/olmocr.git@d4b902cea235bb64a252d1e3f53cad41e22eb6ea#egg=olmocr
openai==1.64.0
opencv-python-headless==4.11.0.86
orjson==3.10.15
outlines==0.0.46
packaging==24.2
pandas==2.2.3
parso==0.8.4
partial-json-parser==0.2.1.1.post5
pexpect==4.9.0
pillow==11.1.0
pluggy==1.5.0
prometheus-fastapi-instrumentator==7.0.2
prometheus_client==0.21.1
prompt_toolkit==3.0.50
propcache==0.3.0
proto-plus==1.26.0
protobuf==5.29.3
psutil==7.0.0
ptyprocess==0.7.0
pure_eval==0.2.3
py-cpuinfo==9.0.0
pyairports==2.1.1
pyarrow==19.0.1
pyasn1==0.6.1
pyasn1_modules==0.4.1
pybind11==2.13.6
pycountry==24.6.1
pycparser==2.22
pydantic==2.10.6
pydantic_core==2.27.2
Pygments==2.19.1
pypdf==5.3.0
pypdfium2==4.30.1
pytest==8.3.4
python-dateutil==2.9.0.post0
python-dotenv==1.0.1
python-multipart==0.0.20
pytz==2025.1
PyYAML==6.0.2
pyzmq==26.2.1
RapidFuzz==3.12.1
ray==2.42.1
referencing==0.36.2
regex==2024.11.6
requests==2.32.3
rich==13.9.4
rpds-py==0.23.1
rsa==4.9
s3transfer==0.11.2
safetensors==0.5.3
sentencepiece==0.2.0
setproctitle==1.3.5
sgl-kernel==0.0.3.post1
sglang==0.4.2
six==1.17.0
smart-open==7.1.0
sniffio==1.3.1
stack-data==0.6.3
starlette==0.45.3
sympy==1.13.1
tiktoken==0.9.0
tokenizers==0.21.0
torch==2.5.1
torchao==0.8.0
torchvision==0.20.1
tqdm==4.67.1
traitlets==5.14.3
transformers==4.49.0
triton==3.1.0
typing_extensions==4.12.2
tzdata==2025.1
urllib3==2.3.0
uvicorn==0.34.0
uvloop==0.21.0
vllm==0.6.4.post1
watchfiles==1.0.4
wcwidth==0.2.13
webencodings==0.5.1
websockets==15.0
wrapt==1.17.2
xformers==0.0.28.post3
xgrammar==0.1.13
xxhash==3.5.0
yarl==1.18.3
zipp==3.21.0
zstandard==0.23.0