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I have created several ballgown input files via Stringties stringtie –e –B -p 8 -G stringtie_merged.gtf -o ...
and then tried to load them in R for Ballgown via bg = ballgown(dataDir = "/fast/AG_Metzger/philipp/results/ballgown/IRF" , samplePattern = "Sample_E_" , pData = pheno_data)
IRF is the folder including several folders for the different samples. When I do this I get the output with the error:
Hi,
I have created several ballgown input files via Stringties
stringtie –e –B -p 8 -G stringtie_merged.gtf -o ...
and then tried to load them in R for Ballgown via
bg = ballgown(dataDir = "/fast/AG_Metzger/philipp/results/ballgown/IRF" , samplePattern = "Sample_E_" , pData = pheno_data)
IRF is the folder including several folders for the different samples. When I do this I get the output with the error:
Thu Sep 9 16:57:14 2021 Thu Sep 9 16:57:14 2021: Reading linking tables Thu Sep 9 16:57:18 2021: Reading intron data files Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : scan() expected 'an integer', got '0.00'
Has someone had the same issue and if so, how can I fix this?
Thanks for your help in advance!
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