dummy.json

{
  "parameters": [
    {
      "training_data": "6133",
      "filtered": 1,
      "batch_size": 256,
      "epochs": 2,
      "logs_path": "logs",
      "data_dir": "data",
      "cuda": 0,
      "test_dataset": "all",
      "model": "dummy_model",
      "save_h5": 1 
    }
  ],
  "model_parameters": [
    {
      "input": {
        "input_shape": 700,
        "num_aminoacids": 21,
        "batch_size": null,
        "dtype": "float32"
      },
      "embedding": {
        "input_dim": 21,
        "output_dim": 21,
        "embeddings_initializer": "uniform",
        "input_length": 700,
        "name": "embedding"
      },
      "conv": {
        "kernel_regularizer": null,
        "activation": "relu",
        "kernel_initializer": "glorot_uniform",
        "data_format": "channels_last",
        "dilation_rate": 1,
        "use_bias": 1,
        "padding": "same",
        "bias_initializer": "zeros",
        "bias_regularizer": null,
        "activity_regularizer": null,
        "kernel_constraint": null,
        "bias_constraint": null
      },
      "conv1": {
        "filters": 32,
        "kernel_size": 3,
        "strides": 1,
        "name": "conv1"
      },
      "dropout1": {
        "rate": 0.3
      },
      "dropout2": {
        "rate": 0.3
      },
      "dense1": {
        "units": 600,
        "kernel_initializer": "glorot_uniform",
        "activation": "relu",
        "name": "dense1"
      },
      "dense2": {
        "units": 8,
        "kernel_initializer": "glorot_uniform",
        "activation": "softmax",
        "name": "main_output"
      },
      "optimizer": {
        "learning_rate": 0.00015,
        "beta_1": 0.9,
        "beta_2": 0.999,
        "epsilon": 1e-07,
        "name": "Adam"
      },

      "callbacks": {
        "tensorboard": {
          "tensorboard": 1,
          "histogram_freq": 0,
          "write_graph": 1,
          "write_images": 0,
          "write_steps_per_second": 0,
          "update_freq": "epoch"
        },
        "earlyStopping": {
          "earlyStopping": 1,
          "monitor" : "val_loss",
          "min_delta": 0,
          "patience": 1,
          "verbose": 1,
          "mode": "auto",
          "baseline": null
        },
        "modelCheckpoint": {
          "filename": "checkpoints",
          "modelCheckpoint": 1,
          "monitor": "val_loss",
          "verbose": 1,
          "save_best_only": 0,
          "save_weights_only": 0,
          "mode": "auto"
        },
        "lrScheduler": {
          "lrScheduler": 1,
          "scheduler": "Step Decay"
        },
        "csv_logger": {
          "csv_logger": 1,
          "append": 0
        },
        "reduceLROnPlateau": {
          "reduceLROnPlateau": 0,
          "monitor": "val_loss",
          "factor": 0.1,
          "patience": 5,
          "verbose": 1,
          "mode": "auto",
          "min_delta": 0.0001,
          "cooldown": 0,
          "min_lr": 0
        }
      }
    }
  ]
}