diff --git a/.github/workflows/scripts/install_r_deps.sh b/.github/workflows/scripts/install_r_deps.sh
index 9d09f0ebb26..0bbb2d089bb 100755
--- a/.github/workflows/scripts/install_r_deps.sh
+++ b/.github/workflows/scripts/install_r_deps.sh
@@ -1,20 +1,21 @@
 #!/bin/bash
-
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
 #
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 #
 
 set -efux -o pipefail
diff --git a/.github/workflows/scripts/prepare_sparklyr_sedona_test_env.sh b/.github/workflows/scripts/prepare_sparklyr_sedona_test_env.sh
index 0f98ef9921b..6964f7e2b56 100755
--- a/.github/workflows/scripts/prepare_sparklyr_sedona_test_env.sh
+++ b/.github/workflows/scripts/prepare_sparklyr_sedona_test_env.sh
@@ -1,20 +1,21 @@
 #!/bin/bash
-
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
 #
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 #
 
 sedona_jar_files () {
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 7c4e772e952..d683943b183 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -70,6 +70,15 @@ repos:
           - --license-filepath
           - .github/workflows/license-templates/LICENSE.txt
           - --fuzzy-match-generates-todo
+      - id: insert-license
+        name: add license for all Shell files
+        files: \.sh$
+        args:
+          - --comment-style
+          - '|#|'
+          - --license-filepath
+          - .github/workflows/license-templates/LICENSE.txt
+          - --fuzzy-match-generates-todo
       - id: insert-license
         name: add license for all Markdown files
         files: \.md$
@@ -155,7 +164,7 @@ repos:
         name: run black-jupyter
         description: format Python files and Jupyter Notebooks with black
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v20.1.7
+    rev: v20.1.8
     hooks:
       - id: clang-format
         name: run clang-format
@@ -179,7 +188,7 @@ repos:
         args: [--ignore-words=.github/linters/codespell.txt]
         exclude: ^docs/image|^spark/common/src/test/resources|^docs/usecases|^tools/maven/scalafmt|osmpbf/build|^docker/zeppelin
   - repo: https://github.com/gitleaks/gitleaks
-    rev: v8.27.2
+    rev: v8.28.0
     hooks:
       - id: gitleaks
         name: run gitleaks
diff --git a/docker/build.sh b/docker/build.sh
index 0f5aac67197..324688e2493 100755
--- a/docker/build.sh
+++ b/docker/build.sh
@@ -1,20 +1,21 @@
 #!/bin/bash
-
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
 #
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 #
 
 SPARK_VERSION=$1
diff --git a/docker/install-sedona.sh b/docker/install-sedona.sh
index fec6184bbc3..f849980cce0 100755
--- a/docker/install-sedona.sh
+++ b/docker/install-sedona.sh
@@ -1,19 +1,20 @@
 #!/bin/bash
-
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 
 set -e
 
@@ -49,5 +50,4 @@ curl --retry 5 --retry-delay 10 --retry-connrefused https://repo1.maven.org/mave
 # Install Spark extension Python
 pip3 install pyspark-extension=="${spark_extension_version}"."${spark_compat_version}"
 
-# Download GeoTools jar
 curl --retry 5 --retry-delay 10 --retry-connrefused https://repo1.maven.org/maven2/org/datasyslab/geotools-wrapper/"${geotools_wrapper_version}"/geotools-wrapper-"${geotools_wrapper_version}".jar -o "$SPARK_HOME"/jars/geotools-wrapper-"${geotools_wrapper_version}".jar
diff --git a/docker/install-spark.sh b/docker/install-spark.sh
index ed4a077a2e7..8f9a1323a5c 100755
--- a/docker/install-spark.sh
+++ b/docker/install-spark.sh
@@ -1,19 +1,20 @@
 #!/bin/bash
-
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 
 set -e
 
diff --git a/docker/install-zeppelin.sh b/docker/install-zeppelin.sh
index 20dfe4078dd..f700667cf1b 100755
--- a/docker/install-zeppelin.sh
+++ b/docker/install-zeppelin.sh
@@ -1,19 +1,21 @@
 #!/bin/bash
-
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
 #
-#    http://www.apache.org/licenses/LICENSE-2.0
+#     http://www.apache.org/licenses/LICENSE-2.0
 #
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
 set -e
 
 # Define Zeppelin version and target directory
diff --git a/docker/start.sh b/docker/start.sh
index c9beeaafe56..edf98ed1e4b 100755
--- a/docker/start.sh
+++ b/docker/start.sh
@@ -1,19 +1,20 @@
 #!/usr/bin/env bash
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
 
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 
 DRIVER_MEM=${DRIVER_MEM:-4g}
 EXECUTOR_MEM=${EXECUTOR_MEM:-4g}
diff --git a/docker/zeppelin/update-zeppelin-interpreter.sh b/docker/zeppelin/update-zeppelin-interpreter.sh
index 2ae33720138..5bc55fafb2b 100755
--- a/docker/zeppelin/update-zeppelin-interpreter.sh
+++ b/docker/zeppelin/update-zeppelin-interpreter.sh
@@ -1,20 +1,21 @@
 #!/bin/sh
-
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#    http://www.apache.org/licenses/LICENSE-2.0
 #
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+
+#   http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
 #
 
 apt-get install -y jq
diff --git a/python/build_wheel.sh b/python/build_wheel.sh
index e5658255f9c..6f37b817166 100755
--- a/python/build_wheel.sh
+++ b/python/build_wheel.sh
@@ -1,5 +1,4 @@
 #!/bin/bash
-
 # Licensed to the Apache Software Foundation (ASF) under one
 # or more contributor license agreements.  See the NOTICE file
 # distributed with this work for additional information