diff --git a/analyses/mutational-signatures/mutational_signatures.Rmd b/analyses/mutational-signatures/mutational_signatures.Rmd index 044a96e7aa..b8ce3b611e 100644 --- a/analyses/mutational-signatures/mutational_signatures.Rmd +++ b/analyses/mutational-signatures/mutational_signatures.Rmd @@ -37,17 +37,6 @@ _This assumes you are in the top directory of the repository._ Import necessary functions. ```{r} -if (!("deconstructSigs" %in% installed.packages())) { - BiocManager::install("BSgenome.Hsapiens.UCSC.hg38") - install.packages("deconstructSigs") -} -if (!("devtools" %in% installed.packages())) { - install.packages("devtools") -} -if (!("sigfit" %in% installed.packages())) { - devtools::install_github("kgori/sigfit", build_vignettes = TRUE, - build_opts = c("--no-resave-data", "--no-manual")) -} # Magrittr pipe `%>%` <- dplyr::`%>%`