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.h not found when building with uv
but found when using pip and a virtual env
#10052
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I also had a similar outcome. I haven't really looked at the documentation or the recommended ways to build it, but it's interesting that it does work with build isolation with ~ uv pip install petsc4py==3.22.1
Resolved 3 packages in 3m 17s
× Failed to build `petsc4py==3.22.1`
├─▶ The build backend returned an error
╰─▶ Call to `setuptools.build_meta.build_wheel` failed (exit status: 1)
[stdout]
running bdist_wheel
running build
running build_src
using Cython 3.0.11
cythonizing 'petsc4py/PETSc.pyx' -> 'petsc4py/PETSc.c'
running build_py
creating build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/PETSc.py -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/typing.py -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/petsc4py
creating build/lib.linux-x86_64-cpython-312/petsc4py/lib
copying src/petsc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib
copying src/petsc4py/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/__main__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/py.typed -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/PETSc.h -> build/lib.linux-x86_64-cpython-312/petsc4py
copying src/petsc4py/PETSc_api.h -> build/lib.linux-x86_64-cpython-312/petsc4py
creating build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/include/petsc4py/pyscalar.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/include/petsc4py/pybuffer.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/include/petsc4py/numpy.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py
copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib
copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib
copying src/petsc4py/lib/petsc.cfg -> build/lib.linux-x86_64-cpython-312/petsc4py/lib
running build_ext
PETSC_DIR: /root/.cache/uv/builds-v0/.tmpYkB4Yy/lib/python3.12/site-packages/petsc
PETSC_ARCH:
version: 3.22.1 release
integer-size: 32-bit
scalar-type: real
precision: double
language: CONLY
compiler: clang
linker: clang
building 'PETSc' extension
creating build/temp.linux-x86_64-cpython-312/src/petsc4py
clang -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wconversion -Wno-sign-conversion -Wno-float-conversion
-Wno-implicit-float-conversion -fstack-protector -Qunused-arguments -Wall -Wwrite-strings
-Wno-unknown-pragmas -Wconversion -Wno-sign-conversion -Wno-float-conversion -Wno-implicit-float-conversion
-fstack-protector -Qunused-arguments -g -O3 -fPIC -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3
-Wall -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc
-Isrc/petsc4py/include -I/root/.cache/uv/builds-v0/.tmpYkB4Yy/lib/python3.12/site-packages/numpy/_core/include
-I/root/.cache/uv/sdists-v6/pypi/petsc/3.22.1/hJkKH1sasJwoixz03FvId/src/build/bdist.linux-x86_64/wheel/petsc/include
-I/root/.cache/uv/builds-v0/.tmpYkB4Yy/include -I/usr/local/include/python3.12 -c src/petsc4py/PETSc.c -o
build/temp.linux-x86_64-cpython-312/src/petsc4py/PETSc.o
[stderr]
src/petsc4py/PETSc.c:1222:10: fatal error: 'petsc.h' file not found
#include <petsc.h>
^~~~~~~~~
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
hint: This error likely indicates that you need to install a library that provides "petsc.h" for
`[email protected]` |
Looking at their setup.py I notice they leverage TL;DR try setting CC @konstin |
I am trying to install the package
petsc4py
. When trying to build using uv I have the error:On the other hand, using
pip install --use-pep517 --force-reinstall --no-cache petsc4py
in a python 3.12 environment works just fine:My system is:
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