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mkdocs.yml
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mkdocs.yml
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site_name: Genomics Workflows on AWS
nav:
- Overview: index.md
- Disclaimer: disclaimer.md
- Quick Start: quick-start.md
- Core Environment:
- Introduction: core-env/introduction.md
- Data Storage: core-env/create-s3-bucket.md
- Permissions: core-env/create-iam-roles.md
- Compute Resources: core-env/create-custom-compute-resources.md
- AWS Batch: core-env/setup-aws-batch.md
- Customized Deployment: core-env/custom-deploy.md
- Building a Custom Distribution: core-env/build-custom-distribution.md
# - Containerized Tooling:
# - Introduction: containers/container-introduction.md
# - Examples: containers/container-examples.md
- Workflow Orchestration:
- Introduction: orchestration/orchestration-intro.md
- AWS Step Functions:
- Overview: orchestration/step-functions/step-functions-overview.md
# - Examples: orchestration/step-functions/step-functions-examples.md
- Cromwell:
- Overview: orchestration/cromwell/cromwell-overview.md
- Examples: orchestration/cromwell/cromwell-examples.md
- Trouble Shooting: orchestration/cromwell/cromwell-trouble-shooting.md
- Nextflow:
- Overview: orchestration/nextflow/nextflow-overview.md
# - Examples: orchestration/nextflow/nextflow-examples.md
- Trouble Shooting: orchestration/nextflow/nextflow-trouble-shooting.md
- Cost Effective Workflows: orchestration/cost-effective-workflows/cost-effective-workflows.md
extra_css: [extra.css]
theme:
name: material
logo: 'images/AWS_logo_RGB_REV.svg'
palette:
primary: blue grey
accent: deep orange
markdown_extensions:
- admonition
- pymdownx.emoji:
emoji_generator: !!python/name:pymdownx.emoji.to_png
repo_url: &repo_url https://github.com/aws-samples/aws-genomics-workflows/
repo_name: Contribute
copyright: 2019 Amazon Web Services
plugins:
- search
- macros
extra:
repo_url: *repo_url
artifacts:
s3:
bucket: aws-genomics-workflows
site:
s3:
bucket: docs.opendata.aws
prefix: genomics-workflows
use_directory_urls: false