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setup.py
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setup.py
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from setuptools import setup
from os import path
from io import open
here = path.abspath(path.dirname(__file__))
# Get the long description from the README file
with open(path.join(here, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
# Arguments marked as "Required" below must be included for upload to PyPI.
# Fields marked as "Optional" may be commented out.
setup(
name='nrpcalc',
# Link: https://www.python.org/dev/peps/pep-0440/#version-scheme
version='1.7.5',
description='Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems',
long_description=long_description,
long_description_content_type='text/markdown',
url='https://github.com/ayaanhossain/nrpcalc',
author='Ayaan Hossain and Howard Salis',
author_email='[email protected], [email protected]', # Optional
classifiers=[ # Optional
# How mature is this project? Common values are
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
'Development Status :: 4 - Beta',
# Indicate who your project is intended for
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Chemistry',
# Pick your license as you wish
'License :: OSI Approved :: MIT License',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
# These classifiers are *not* checked by 'pip install'. See instead
# 'python_requires' below.
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
],
keywords=' '.join([
'synthetic',
'computational',
'biology',
'genetic',
'parts',
'calculator',
'non-repetitive',
'design',
'discovery',
'algorithm',
'stable',
'systems',
'nrp',
'repeats',
'vertex',
'cover',
'path',
'finding']),
packages=['nrpcalc', 'nrpcalc.base'],
package_dir={
'nrpcalc': './nrpcalc'
},
# package_data={
# 'nrpcalc': ['base/*.par']
# },
python_requires='>=3.6, <4',
install_requires=[
'numpy>=1.19.0',
'biopython>=1.77',
'sharedb>=1.1.4',
'scipy>=1.5.1',
'networkx>=2.4',
'jupyter>=1.0.0',
'scikit-learn>=0.23.1',
'seaborn>=0.10.1',
'statsmodels>=0.11.0',
'ViennaRNA>=2.4.18a1'],
project_urls={ # Optional
'Bug Reports': 'https://github.com/ayaanhossain/nrpcalc/issues',
'Source' : 'https://github.com/ayaanhossain/nrpcalc/tree/master/nrpcalc',
},
)