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Apologies for the delay. I looked into this, and as of now Github Desktop does not support filters except for Git LFS, so unfortunately git-crypt will not work with GitHub Desktop. This is something that we would like to add in the future, but I don't have a timeline for when that may happen. I'm sorry that I don't have better news.
The substantive issue is AGWA/git-crypt#33, with a suggested upstream fix here:
AGWA/git-crypt#33 (comment)
Just thought I'd share in this fine repo 😄 - thanks for organizing this @baldwindavid!
I'll send a note to github.com/contact referencing this.
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