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singular version of staxids command? #807

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ewaltari opened this issue May 17, 2024 · 1 comment
Open

singular version of staxids command? #807

ewaltari opened this issue May 17, 2024 · 1 comment

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@ewaltari
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Hello!
Per these option details, I was trying to output a singular (top?) taxid and ssciname
staxids Unique Subject Taxonomy ID(s), separated by a ’;’ (in numerical order). This field requires setting the --taxonmap parameter for makedb.

When running command-line blast, for example, including either "staxid" or "staxids" will give output.
However when running Diamond, I can only get output using "staxids" which runs fine, just with multiple ids.
When I try staxid, I get error
Error: Invalid output field: staxid

Thanks, Eric

@bbuchfink
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The staxid field is not supported by diamond at this time but I will consider the feature request.

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