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Benjamin Buchfink edited this page Dec 12, 2020 · 28 revisions

Synopsis

# downloading the tool
wget http://github.com/bbuchfink/diamond/releases/download/v2.0.5/diamond-linux64.tar.gz
tar xzf diamond-linux64.tar.gz
# creating a diamond-formatted database file
./diamond makedb --in reference.fasta -d reference
# running a search in blastp mode
./diamond blastp -d reference -q queries.fasta -o matches.tsv