versions.tsv

Formula	Version
a5	20160825
abacas	1.3.1
abricate	0.8.13_1
abyss	2.1.5_1
abyss-explorer	1.3.4
ace-corrector	20150501
adam	0.28.0
adapterremoval	2.2.2
adoptopenjdk	1.8.0.212
afra	2.1
ale	0.0.20180904
andi	0.12
apache-spark	2.4.3
aragorn	1.2.38
arcs	1.0.6
argtable	2.13
arks	1.0.4
armadillo	9.600.5
arpack	3.7.0_2
art	20160605_1
artemis	17.0.1_1
ascp	3.7.7
astral	5.5.6
augustus	3.3.2
autoconf	2.69_1
autogen	5.18.16
automake	1.16.1_1
bagit	1.7.0
bali-phy	3.4.1
bam-readcount	0.8.0
bamhash	1.0
bamm	2.5.0
bamtools	2.5.1
bamutil	1.0.13
bandage	0.8.1
barrnap	0.9
bazam	1.0.1
bbtools	38.59
bcalm	2.2.0
bcftools	1.9
bdw-gc	8.0.4
beagle	3.1.2
beast	1.10.4
beast2	2.5.2
bedops	2.4.36
bedtools	2.28.0
beetl	0.10.0
berkeley-db	18.1.32
berokka	0.2
bfc	r181
bioawk	1.0
biobloomtools	2.3.2
biomake	0.1.5
bioperl	1.007002_3
biopython	1.74
bison	3.4.1
blast	2.9.0
blast-legacy	2.2.26
blat	36
bless	0.24_6
bonsai	0.3
boost	1.70.0
bowtie	1.2.3
bowtie2	2.3.5.1
bracken	2.2
breseq	0.33.0
BUSCO	3.0.2
busco	3.0.2_2
bwa	0.7.17
bzip2	1.0.8
CacheControl	0.11.7
cairo	1.16.0_2
cannoli	0.6.0
canu	1.8
cap3	2015-02-11
capnp	0.7.0
cd-hit	4.8.1
cegma	2.5
celera-assembler	8.3rc1
centrifuge	1.0.3
certifi	2019.6.16
chardet	3.0.4
circlator	1.5.5
circos	0.69-9
clark	1.2.3
clonalframeml	1.11
clonehd	1.17.9_1
clustal-omega	1.2.4
clustal-w	2.1
cmake	3.15.2
coloredlogs	10.0
consel	0.20
cpanminus	1.9019
crumble	0.8.1
curl	7.65.3
cutadapt	2.3
cwlref-runner	1.0
cwltool	1.0.20190815141648
cycler	0.10.0
daligner	1.0
das_tool	1.1.1_1
dazz_db	1.0
decorator	4.4.0
delly	0.7.7_4
diamond	0.9.25
dida	1.0.1_2
discovar	52488
disty	0.1.0
dsh-bio	1.2
dsk	2.1.0
dwgsim	0.1.12
e-mem	1.0.1
easel	0.43
edirect	11.6
eigen	3.3.7
elph	1.0.1
ema	0.6.2
emacs	26.2
emboss	6.6.0
epa-ng	0.3.5
exabayes	1.5
exonerate	2.4.0
expat	2.2.7
express	1.5.2
fasta	36.3.8g
fastani	1.1
fastml	3.1_1
fastp	0.20.0
fastq-pair	1.0
fastq-tools	0.8
fastqc	0.11.8
fasttree	2.1.10_1
fastuniq	1.1
fastx_toolkit	0.0.14_1
fermi	1.1
fermi-lite	0.1
fermi2	0.1
fermikit	0.13
figtree	1.4.4
filtlong	0.2.0
finch-rs	0.2.0
flac	1.3.2_2
flash	1.2.11
flex	2.6.4_1
flowcraft	1.4.1_1
flye	2.5
fontconfig	2.13.1
fqzcomp	4.6
fraggenescan	1.31_1
freebayes	1.3.1
freec	11.0
freeglut	3.0.0_1
freetype	2.10.1
fribidi	1.0.5
fsa	1.15.9
future	0.17.1
fwdpp	0.6.1
gappa	0.4.0
gatb	1.1.0
gatk	4.1.2.0
gblocks	0.91b
gcc	5.5.0_4
gcc@6	6.5.0_2
gd	2.2.5
gdbm	1.18.1
gemma	0.98.1
geneid	1.4.4
genewise	2.4.1_1
genome-painter	0.0.6
GenomeTools	1.5.10
genometools	1.5.10_3
gepard	1.40
gettext	0.20.1_1
gfakluge	1.1.0
gfalint	1.0.0
gfaview	0.0.53
gingr	1.2
glew	2.1.0
glib	2.60.6
glimmerhmm	3.0.4
glm	0.9.9.5
glpk	4.65
glu	9.0.0
gmap-gsnap	2019-06-10
gmp	6.1.2_3
gnutls	3.6.9
google-sparsehash	2.0.3_1
gperf	3.1
gperftools	2.7
grabix	0.1.6
graphite2	1.3.13
graphviz	2.40.1_2
groff	1.22.4
gsl	2.5
gts	0.7.6_1
guile	2.2.6
gzip	1.10
gzstream	1.5
harfbuzz	2.5.3
harvest-tools	1.3
hdf5	1.10.5_1
hisat	0.1.6b
hisat2	2.1.0
hlaminer	1.3.1
hmmer	3.2.1
hmmer2	2.4i
htsbox	r312
htslib	1.9
humanfriendly	4.18
humann2	0.11.1
hwloc	2.0.4
icu4c	64.2
idba	1.1.3_2
idna	2.8
igraph	0.7.1_6
igv	2.5.3
impute2	2.3.2
indel-seq-gen	2.1.03
indelible	1.03
infernal	1.1.2
iqtree	1.6.11
isl	0.21
isl@0.18	0.18
isodate	0.6.0
ispcr	33
iva	1.0.9
jasper	2.0.16_1
jellyfish	2.2.10
jpeg	9c
json-c	0.13.1
jspecies	1.2.1
junctools	1.1.0
k8	0.2.4
kaiju	1.7.0
kallisto	0.46.0
kat	2.4.1_2
kent-tools	367
kiwisolver	1.0.1
kma	1.2.8
kmacs	20140605
kmc	3.1.1
kmergenie	1.7048_1
kmerstream	1.1_1
kollector	1.0
kr	2.0.2
kraken	1.1
kraken2	2.0.8
last	982
lastz	1.04.00
legsta	0.3.2
less	530_1
libarchive	3.3.3
libbigwig	0.4.4
libbsd	0.9.1
libcap	2.25
libdmx	1.1.4
libdrm	2.4.99
libedit	20190324-3.1
libelf	0.8.13_1
libevent	2.1.11
libffi	3.2.1
libfontenc	1.1.4
libfs	1.0.8
libharu	2.3.0
libice	1.0.10
libidn	1.35
libidn2	2.2.0_1
libmagic	5.37
libmpc	1.1.0
libmuscle	3.7
libogg	1.3.3
libomxil-bellagio	0.9.3_1
libpciaccess	0.16
libpll	0.3.2
libpng	1.6.37
libproxy	0.4.15_2
libpthread-stubs	0.4
libsequence	1.9.7
libsm	1.2.3
libsndfile	1.0.28
libsoxr	0.1.3
libtasn1	4.14
libtiff	4.0.10_1
libtool	2.4.6_2
libunistring	0.9.10
libva	2.5.0
libvorbis	1.3.6
libx11	1.6.8
libxau	1.0.9
libxaw	1.0.13
libxaw3d	1.6.3
libxcb	1.13.1
libxcomposite	0.4.5
libxcursor	1.2.0
libxdamage	1.1.5
libxdmcp	1.1.3
libxext	1.3.4
libxfixes	5.0.3
libxfont	1.5.4
libxft	2.3.3
libxi	1.7.10
libxinerama	1.1.4
libxkbcommon	0.8.4
libxkbfile	1.1.0
libxml2	2.9.9_2
libxml2-python	2.9.9
libxmu	1.1.3
libxpm	3.5.12
libxrandr	1.5.2
libxrender	0.9.10
libxres	1.2.0
libxscrnsaver	1.2.3
libxshmfence	1.3
libxt	1.2.0
libxtst	1.2.3
libxv	1.0.11
libxvmc	1.0.11
libxxf86dga	1.1.5
libxxf86vm	1.1.4
libyaml	0.2.2
light-assembler	1.0.0
lighter	1.1.1_2
links-scaffolder	1.8.7
lmdb	0.9.24
lockfile	0.12.2
lofreq	2.1.3.1
lp_solve	5.5.2.0
lrsim	1.0_1
lsd	0.16.0
lua	5.3.5_2
lumpy-sv	0.2.13
lxml	4.4.1
lzo	2.10
m4	1.4.18
macse	1.2
mafft	7.429
magic-blast	1.3.0
makedepend	1.0.5
maker	2.31.10_2
man-db	2.8.5_1
mapsembler2	2.2.4_1
maq	0.7.1_1
mash	2.1.1
masurca	3.3.3
matplotlib	2.2.3
matplotlib	2.2.3
maxbin2	2.2.6
mcl	14-137
megahit	1.1.4
meme	5.0.4
mesa	19.0.6
metabat	2.13
metaphlan	1.7.8
methpipe	3.4.3_1
mhap	2.1.3
miller	5.4.0
minced	0.4.0
minia	3.2.1
miniasm	0.3
minigraph	0.2
minimap	0.2
minimap2	2.17
mir-prefer	0.24_1
mistune	0.8.4
mitofy	20120322
mlst	2.16.4
mmtf-cpp	1.0.0
mosdepth	0.2.3
mothur	1.42.3
mp-est	2.0
mpboot	1.1.0
mpfr	4.0.2
mrbayes	3.2.7
msgpack	3.2.0
multi-worm-tracker	1.3.0
mummer	3.23_3
muscle	3.8.1551
mypy-extensions	0.4.1
mysql@5.7	5.7.27
nano	4.3
nanopolish	0.11.1
ncl	2.1.18
ncurses	6.1
netpbm	10.73.27
nettle	3.4.1
networkx	2.3
newick-utils	1.6
newicktools	0.1
nextflow	19.04.1
nextgenmap	0.5.5
ngmaster	0.5.5
ngmerge	0.2
nlopt	2.6.1
nonpareil	3.3.1
nose	1.3.7
novoalign	3.02.13
ntcard	1.1.1
ntedit	1.2.2
nthits	0.0.1
numpy	1.16.4
numpy	1.16.4
nxtrim	0.4.3
oases	0.2.08
oma	2.3.1
open-mpi	4.0.1_2
openblas	0.3.6_1
openssl	1.0.2s
orfm	0.7.1
orthofinder	2.1.2
p11-kit	0.23.16.1
paml	4.9i
pandas	0.25.0
pandaseq	2.11
pandoc	2.7.3
pango	1.44.3
panito	0.0.1
parallel	20190722
parasail	2.4.1
parsnp	1.2_3
patchelf	0.10
pathd8	1.0
pathlib2	2.3.4
pathvisio	3.3.0
pcre	8.43
pear	0.9.10
perl	5.30.0
phipack	2013-03-05
phlawd	3.4b_1
phyml	3.3.20190321
phyutility	2.7.1
phyx	0.999_1
picard-tools	2.20.5
pigz	2.4
piler	1.0_1
pilercr	1.06
pilon	1.23
pixman	0.38.4
pkg-config	0.29.2_1
plink	1.07
poa	2.0
porechop	0.2.4
porechop	0.2.4
portcullis	1.1.0
portcullis	1.1.0_1
pplacer	1.1.alpha17
prank	170427
prodigal	2.6.3_1
prokka	1.14.0
proteinortho	6.0.6
protobuf	3.7.1
protobuf	3.7.1
protobuf@3.1	3.1.0
prov	1.5.1
psmc	0.6.5
psutil	5.6.3
pullseq	1.0.2
pulseaudio	12.2
pymol	2.3.0
pyparsing	2.1.10
pyqt	5.10.1_1
python	3.7.4
python-dateutil	2.8.0
python@2	2.7.16
pytz	2019.2
PyVCF	0.6.8
qt	5.13.0
quast	5.0.2
quest	2.4
quickmerge	0.3
quicktree	2.5
quip	1.1.8
quorum	1.0.0
r	3.6.1
r8s	1.81
racon	1.3.2_1
rails	1.4.2
rampart	0.12.2
rapidnj	2.3.2
raxml	8.2.12
raxml-ng	0.9.0
ray	2.3.1_2
rcorrector	1.0.3
rdflib	4.2.2
rdflib-jsonld	0.4.0
readline	8.0.0_1
readsim	1.6
realphy	1.12
recon	1.08
repaq	0.2.0
repeatmasker	4.0.7_4
repeatmodeler	1.0.8_1
repeatscout	1.0.5
requests	2.22.0
rmblast	2.2.28_1
rna-star	2.5.3a
rnammer	1.2
ropebwt2	r181
rsync	3.1.3_1
rtg-tools	3.9
ruamel.yaml	0.15.97
ruby	2.6.3
salmid	0.1.23
salmon	0.9.1
sambamba	0.6.8
samblaster	0.1.24
samclip	0.2
samtools	1.9
samtools@0.1	0.1.20
scandir	1.10.0
scarpa	0.241
schema-salad	4.5.20190815125611
scipy	1.3.0
scipy	1.3.0
sdsl-lite	2.1.1_2
seq-gen	1.3.4
seqan	2.4.0
seqkit	0.10.2
seqtk	1.3
sequel	1.0.2
sga	0.10.15_1
shellescape	3.4.1
shovill	1.0.4
shrimp	2.2.3
sickle	1.33
simulate-pcr	1.2
sip	4.19.8_12
six	1.10.0
ska	1.0
skesa	2.3.0
skewer	0.2.2
smalt	0.7.6
snap	2013-11-29_1
snippy	4.4.0
snoscan	0.9.1
snp-dists	0.6.3
snp-sites	2.4.0
snpeff	4.3t
soapdenovo	2.04.r240_1
solexaqa	3.1.7.1
sortmerna	2.1
spaced	20160804_1
spades	3.13.0_1
speexdsp	1.2rc3
spici	20130427
sqlite	3.29.0
squeakr	0.6
squeezambler	2.0.3
sratoolkit	2.9.3
ssake	3.8.4
staden-io-lib	1.14.11
stringtie	1.3.6
sumaclust	1.0.31
swarm	2.2.2
swi-prolog	8.0.3
swipe	2.1.0
systemd	234_3
szip	2.1.1_1
tagdust	2.33
tasr	1.6.2
taxonkit	0.5.0
TBB	0.1
tbb	2019_U8
tbl2asn	25.7
tcsh	6.21.00
tigmint	1.1.2_2
tophat	2.1.1_7
transabyss	2.0.1
transdecoder	5.5.0
transrate-tools	1.0.0.beta4
treepl	2017.05.23_2
trf	4.09
trimadap	0.1.11
trimal	1.4.1
trimmomatic	0.39
trinity	2.8.3_1
trnascan	2.0.3
typing-extensions	3.7.4
unbound	1.9.2_1
unicycler	0.4.7
unicycler	0.4.7
unikmer	0.4.3
uniqtag	1.0
unixodbc	2.3.7
unzip	6.0_6
uproc	1.2.0
urllib3	1.25.3
util-linux	2.34
util-macros	1.19.2
vague	1.0.5
valgrind	3.15.0_1
varscan	2.4.3
varsim	0.8.2
vcake	2.0
vcflib	1.0.0_2
vcftools	0.1.16
velvet	1.2.10
velvetoptimiser	2.2.6
verticalize	1.0.1_1
viennarna	2.4.3
vim	8.1.1800
virtualenv	16.7.2
vsearch	2.13.6
vt	0.5772_2
wayland	1.17.0
webp	1.0.3
wget	1.20.3_1
wiggletools	1.2.3
wish	1.0
wtdbg2	2.4
xcb-util	0.4.0
xcb-util-image	0.4.0
xcb-util-keysyms	0.4.0
xcb-util-renderutil	0.3.9
xcb-util-wm	0.4.1
xdpyinfo	1.3.2
xkeyboardconfig	2.27
xmatchview	1.1.1
xorg	20170115_1
xorgproto	2019.1
xssp	3.0.9
xtrans	1.4.0
xz	5.2.4
yaha	0.1.83
zip	3.0
zlib	1.2.11