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<meta name="description" content="BG7 is an open source bacterial genome annotation system, specifically designed for NGS data. It is the result of years of practical …">
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<h1><a href="/">BG7</a></h1>
<h2>bacterial genome annotation system</h2>
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<p>
BG7 is an open source bacterial genome annotation system, specifically designed for NGS data.
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<p>
It is the result of years of practical experience: we at <a href="http://era7bioinformatics.com"><b>era7 bioinformatics</b></a> have been annotating bacterial genomes since the days when <code>454 GS20</code> was something <em>new</em>. Given the shortcomings of ORF prediction style annotation systems when applied to NGS data, we decided that it was best to start from scratch and design something with a different approach.
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<p>
We used it to <a href="https://github.com/ehec-outbreak-crowdsourced/BGI-data-analysis/">annotate</a> all of the publicly released genome data from the 2011 E. coli EHEC outbreak, yielding the best annotations by far.
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<p>
So, summing up
<blockquote>
If you need a no-dependencies, open source, battle-tested annotation system for bacterial genomes, BG7 might be what you want.
</blockquote>
</p>
<h2>code and license</h2>
<p>
BG7 is licensed under the <em>GNU Affero General Public License v3</em>, which you can read at the GNU <a href="www.gnu.org/licenses/agpl-3.0.html">website</a>. For more about this go to <a href="licensing">licensing</a>. Code and project development is done at github, in the <a href="https://github.com/bg7/bg7">bg7/BG7</a> repository. Read <a href="code">code</a> if you want to know how things are structured there at github.
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<h2>documentation</h2>
<p>
We’re trying to move all documentation to this website (see <a href="docs">docs</a>), but right now a bit of it is still at the project’s <a href="https://github.com/bg7/bg7/wiki">github wiki</a>.
</p>
<h2>citing BG7</h2>
<p>You should cite
<ul>
<li>
<strong>BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data</strong> Pablo Pareja-Tobes, Marina Manrique, Eduardo Pareja-Tobes, Eduardo Pareja, Raquel Tobes <br /> <em>PLoS One</em> | <strong>2012</strong> | <a href="http://www.ncbi.nlm.nih.gov/pubmed/23185310" title="http://www.ncbi.nlm.nih.gov/pubmed/23185310">pubmed</a>
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