nanodoc.def

BootStrap: library
From: ubuntu:20.04

%files
    requirements_new.txt

%post
    # update and install essential dependencies
    apt-get -y update
    apt-get update && apt-get install -y wget git pip
    
    # install dependencies via conda
    git clone https://github.com/uedaLabR/nanoDoc.git  
    pip install --upgrade pip
    pip install -r requirements_new.txt
    cd nanoDoc
    mkdir weight5mer
    mv ./weight5mer_1/* ./weight5mer
    mv ./weight5mer_2/* ./weight5mer
    rm -r ./weight5mer_*
    cd src

%environment
    # set up all essential environment variables
    export LC_ALL=C

%labels
    Author Bhargava Reddy Morampalli
    Version v1.0
    MyLabel nanodoc