You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I have recently come across the PharmacoDB Database and can appreciate that it is a fantastic resource. I was wondering if you could provide information or put me in touch with someone that can explain the calculation for DSS1 (arb.) that is included as a summary statistic for cell line dose-response data.
It is my understanding for drug sensitivity scores that DSS1 and DSS3 have output values between 0 (insensitive) and 100 (highly sensitive), whereas for DSS2, the value is between 0 (insensitive) and 50 (highly sensitive). This is evident in the article cited Yadav et al. (2014) and using the R “DSS” package. However, the DSS values reported for PharmacoDB appear to be between 0 – 0.5. Is there another step of normalisation that has been used to calculate an arbitrary value (ie DSS1 (arb.))? I have yet to find any information about further normalisation in the article Smirnov et al. (2017) which is associated with the database. Thanks kindly in advance.
The text was updated successfully, but these errors were encountered:
I have recently come across the PharmacoDB Database and can appreciate that it is a fantastic resource. I was wondering if you could provide information or put me in touch with someone that can explain the calculation for DSS1 (arb.) that is included as a summary statistic for cell line dose-response data.
It is my understanding for drug sensitivity scores that DSS1 and DSS3 have output values between 0 (insensitive) and 100 (highly sensitive), whereas for DSS2, the value is between 0 (insensitive) and 50 (highly sensitive). This is evident in the article cited Yadav et al. (2014) and using the R “DSS” package. However, the DSS values reported for PharmacoDB appear to be between 0 – 0.5. Is there another step of normalisation that has been used to calculate an arbitrary value (ie DSS1 (arb.))? I have yet to find any information about further normalisation in the article Smirnov et al. (2017) which is associated with the database. Thanks kindly in advance.
The text was updated successfully, but these errors were encountered: