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add logging for when a patient fails any step and is removed from pipeline #5

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strixy16 opened this issue Nov 7, 2024 · 1 comment

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strixy16 commented Nov 7, 2024

Want to add logging to this pipeline to see if we can identify where the HNSCC patient number drops off

strixy16 assigned skim2257

strixy16 added this to READII-2-ROQC Pipeline

github-project-automation bot moved this to Todo in READII-2-ROQC Pipeline

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skim2257 commented Nov 7, 2024

i get 442 samples before running FMCIB.
Usually after running the conversion script: https://github.com/strixy16/negative-control-to-nifti/tree/main

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