Update to new standards-compliant bids test set

circle.yml

@@ -12,7 +12,7 @@ dependencies:
     - "~/data"
 
   override:
-    - if [[ ! -d ~/data/ds003_downsampled ]]; then wget -c -O ${HOME}/ds003_downsampled.tar "https://files.osf.io/v1/resources/9q7dv/providers/osfstorage/57e549dab83f6901d157d1f7" && mkdir -p ${HOME}/data && tar xf ${HOME}/ds003_downsampled.tar -C ${HOME}/data; fi
+    - if [[ ! -d ~/data/ds003_downsampled_v2 ]]; then wget -c --no-check-certificate -O ${HOME}/ds003_downsampled_v2.tar "https://osf.io/8s29u/download" && mkdir -p ${HOME}/data && tar xf ${HOME}/ds003_downsampled_v2.tar -C ${HOME}/data; fi
     - if [[ -e ~/docker/image.tar ]]; then docker load -i ~/docker/image.tar; fi :
         timeout: 21600
     - git describe --tags > version
@@ -25,18 +25,18 @@ dependencies:
 test:
   override:
     # print version
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} --version
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} --version
     # template level run for downsampled dataset
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant1 --participant_label 01 :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant1 --participant_label 01 :
         timeout: 21600
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant1 --participant_label 02 :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant1 --participant_label 02 :
         timeout: 2160
     # participant level tests for a longitudinal dataset
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant2 --participant_label 01 :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant2 --participant_label 01 :
         timeout: 21600
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant2 --participant_label 02 :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs participant2 --participant_label 02 :
         timeout: 21600
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs group :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds003_downsampled_v2:/bids_dataset -v ${HOME}/outputs:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --fast --n_cpus 2 --segmentation_type colin27-subcortical /bids_dataset /outputs group :
         timeout: 21600
 
 deployment: