Merge tag '0.20.0'

Version 0.20.0 (September 24, 2025)

New feature release in the 0.20.x series.

This release finalizes some deprecations that were started in the 0.7 and 0.14 series.
In particular, passing indexer arguments to ``BIDSLayout`` and disabling
``absolute_paths`` mode in ``BIDSLayout()`` or ``BIDSLayout.get()`` will now error.
To adjust indexing behavior, create an explicit ``BIDSLayoutIndexer()`` and pass
``BIDSLayout(..., indexer=indexer)``.
To access relative paths, use the ``BIDSFile.relative_path`` property on
``BIDSLayout.get()`` return values.

* FIX: Check for attribute that can be absent before assigning (#1165)
* FIX: Accommodate deprecations in the upcoming Pandas 3 release (#1173)
* FIX: Repaired convolution issue that arises when onset values are repeated (#1133)
* ENH: StatsModels: Add `invalid_inputs` parameter to allow dropping of missing data columns to run nodes (#1145)
* ENH: Add missing root-level path patterns (#1169)
* ENH: Parse ``seg-`` entities from dseg or probseg files (#1172)
* DOC: Update link to derivatives config file (#1132)
* MNT: Address warnings produced by pybids and dependencies (#1136)
* MNT: Lock test environment, update with dependabot (#1134)

Author: effigies

.github/dependabot.yml

@@ -17,3 +17,7 @@ updates:
     directory: "/"
     schedule:
       interval: weekly
+    groups:
+      uv:
+        patterns:
+          - "*"

.mailmap

@@ -3,8 +3,11 @@ Alejandro de la Vega <[email protected]> <[email protected]>
 Alejandro de la Vega <[email protected]> <[email protected]>
 Alexander Ivanov <[email protected]>
 Alexis Thual <[email protected]>
+Ali Khan <[email protected]>
+Ali Khan <[email protected]> <[email protected]>
 Ankur Sinha <[email protected]>
 Antonin Rovai <[email protected]>
+Ariel Rokem <[email protected]>
 Basile Pinsard <[email protected]>
 Bertrand Thirion <[email protected]>
 Christopher J. Markiewicz <[email protected]>
@@ -18,8 +21,11 @@ Dylan M. Nielson <[email protected]> <[email protected]>
 Evgenii Kalenkovich <[email protected]>
 Gal Ben-Zvi <[email protected]>
 Gregory Kiar <[email protected]> <[email protected]>
+Hans Johnson <[email protected]>
+Hans Johnson <[email protected]> <[email protected]>
 Isla Staden <[email protected]> <[email protected]>
 James D. Kent <[email protected]>
+James D. Kent <[email protected]> <[email protected]>
 Johannes Wennberg <[email protected]>
 Jon Haitz Legarreta <[email protected]>
 Krzysztof J. Gorgolewski <[email protected]>
@@ -33,7 +39,11 @@ Michael Philipp Notter <[email protected]>
 Nick Guenther <[email protected]>
 Oscar Esteban <[email protected]>
 Philip A Cook <[email protected]>
+Satrajit Ghosh <[email protected]>
+Satrajit Ghosh <[email protected]> <[email protected]>
 Steven Tilley II <[email protected]>
 Steven Tilley II <[email protected]> <[email protected]>
 Tal Yarkoni <[email protected]>
+Taylor Salo <[email protected]>
+Taylor Salo <[email protected]> <[email protected]>
 Yaroslav O. Halchenko <[email protected]>

.zenodo.json

@@ -51,6 +51,11 @@
       "affiliation": "University of Texas at Austin",
       "name": "McNamara, Quinten"
     },
+    {
+      "affiliation": "University of Texas at Austin",
+      "name": "Kent, James D.",
+      "orcid": "0000-0002-4892-2659"
+    },
     {
       "affiliation": "University of Oregon",
       "name": "DeStasio, Krista",
@@ -79,16 +84,6 @@
       "name": "Nielson, Dylan M.",
       "orcid": "0000-0003-4613-6643"
     },
-    {
-      "affiliation": "University of Texas at Austin",
-      "orcid": "0000-0002-4892-2659",
-      "name": "James Kent"
-    },
-    {
-      "affiliation": "Neuroscience Program, University of Iowa",
-      "name": "Kent, James D.",
-      "orcid": "0000-0002-4892-2659"
-    },
     {
       "affiliation": "Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany",
       "name": "Appelhoff, Stefan",
@@ -152,6 +147,11 @@
       "name": "Janke, Andrew",
       "orcid": "0000-0002-6314-9027"
     },
+    {
+      "affiliation": "University of Pennsylvania",
+      "name": "Cook, Philip A",
+      "orcid": "0000-0002-1985-8475"
+    },
     {
       "name": "Ivanov, Alexander"
     },
@@ -184,6 +184,16 @@
       "name": "Erkent, Alp",
       "orcid": "0000-0002-8820-4782"
     },
+    {
+      "affiliation": "University of Montréal, Montréal, Canada",
+      "name": "Pinsard, Basile",
+      "orcid": "0000-0002-4391-3075"
+    },
+    {
+      "affiliation": "Stanford University",
+      "name": "Mumford, Jeanette",
+      "orcid": "0000-0002-0926-3531"
+    },
     {
       "affiliation": "Université de Sherbrooke",
       "name": "Legarreta, Jon Haitz",
@@ -218,26 +228,11 @@
       "name": "Rokem, Ariel",
       "orcid": "0000-0003-0679-1985"
     },
-    {
-      "affiliation": "University of Montréal, Montréal, Canada",
-      "name": "Pinsard, Basile",
-      "orcid": "0000-0002-4391-3075"
-    },
     {
       "affiliation": "Ottawa Hospital Research Institute",
       "name": "Boulay, Chadwick",
       "orcid": "0000-0003-1747-3931"
     },
-    {
-      "affiliation": "Stanford University",
-      "name": "Mumford, Jeanette",
-      "orcid": "0000-0002-0926-3531"
-    },
-    {
-      "affiliation": "University of Pennsylvania",
-      "name": "Cook, Philip A",
-      "orcid": "0000-0002-1985-8475"
-    },
     {
       "affiliation": "CEA, Inria",
       "name": "Thual, Alexis"
@@ -281,16 +276,30 @@
       "name": "Thirion, Bertrand",
       "orcid": "0000-0001-5018-7895"
     },
+    {
+      "affiliation": "Stanford University",
+      "name": "Shain, Cory",
+      "orcid": "0000-0002-2704-7197"
+    },
     {
       "affiliation": "Rutgers University",
       "name": "Kleinschmidt, Dave F.",
       "orcid": "0000-0002-7442-2762"
     },
+    {
+      "name": "Ferdman, Emmanuel",
+      "orcid": "0009-0004-8953-0151"
+    },
     {
       "affiliation": "Centre for Addiction and Mental Health, University of Toronto, Canada",
       "name": "Dickie, Erin W",
       "orcid": "0000-0003-3028-9864"
     },
+    {
+      "affiliation": "Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour), Forschungszentrum Jülich",
+      "name": "Raimondo, Fede",
+      "orcid": "0000-0003-4087-8259"
+    },
     {
       "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
       "name": "Ben-Zvi, Gal",

CHANGELOG.rst

@@ -1,6 +1,29 @@
 Changelog
 =========
 
+Version 0.20.0 (September 24, 2025)
+-----------------------------------
+
+New feature release in the 0.20.x series.
+
+This release finalizes some deprecations that were started in the 0.7 and 0.14 series.
+In particular, passing indexer arguments to ``BIDSLayout`` and disabling
+``absolute_paths`` mode in ``BIDSLayout()`` or ``BIDSLayout.get()`` will now error.
+To adjust indexing behavior, create an explicit ``BIDSLayoutIndexer()`` and pass
+``BIDSLayout(..., indexer=indexer)``.
+To access relative paths, use the ``BIDSFile.relative_path`` property on
+``BIDSLayout.get()`` return values.
+
+* FIX: Check for attribute that can be absent before assigning (#1165)
+* FIX: Accommodate deprecations in the upcoming Pandas 3 release (#1173)
+* FIX: Repaired convolution issue that arises when onset values are repeated (#1133)
+* ENH: StatsModels: Add `invalid_inputs` parameter to allow dropping of missing data columns to run nodes (#1145)
+* ENH: Add missing root-level path patterns (#1169)
+* ENH: Parse ``seg-`` entities from dseg or probseg files (#1172)
+* DOC: Update link to derivatives config file (#1132)
+* MNT: Address warnings produced by pybids and dependencies (#1136)
+* MNT: Lock test environment, update with dependabot (#1134)
+
 Version 0.19.0 (March 05, 2025)
 -------------------------------