diff --git a/Dockerfile b/Dockerfile index 6197ffe..cc16851 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,5 +1,6 @@ -FROM debian:12.8-slim AS builder +FROM ubuntu:22.04 +# Some metadata LABEL base_image="ubuntu:22.04" LABEL version="2" LABEL software="diann" @@ -11,25 +12,32 @@ LABEL about.license_file="https://github.com/vdemichev/DiaNN/LICENSE.txt" LABEL about.tags="Proteomics" LABEL maintainer="Yasset Perez-Riverol " +USER root ENV DEBIAN_FRONTEND=noninteractive -RUN apt-get update -y --no-install-recommends && apt-get install -y \ - g++ build-essential cmake zlib1g-dev libbz2-dev libboost-all-dev wget locales unzip && \ - apt-get clean && rm -rf /var/lib/apt/lists/* +# Update package lists and ensure package versions are up to date +RUN apt-get update && apt-get upgrade -y -RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && \ - locale-gen && update-locale LANG=en_US.UTF-8 +# Install necessary packages including locales +RUN apt-get install wget unzip libgomp1 locales -y -RUN mkdir -p /opt/software && \ - wget https://github.com/vdemichev/DiaNN/releases/download/1.9.2/diann-1.9.2.Linux_update_2024-10-31.zip -O /opt/software/diann-1.9.2.Linux_update_2024-10-31.zip && \ - unzip /opt/software/diann-1.9.2.Linux_update_2024-10-31.zip -d /opt/software && \ - mv /opt/software/diann-1.9.2 /usr/diann-1.9.2 && \ - ln -s /usr/diann-1.9.2/diann-linux /usr/diann-1.9.2/diann && \ - rm -rf /opt/software +# Configure locale to avoid runtime errors +RUN locale-gen en_US.UTF-8 && \ + update-locale LANG=en_US.UTF-8 -RUN chmod +x /usr/diann-1.9.2/diann-linux +# Set environment variables for locale +ENV LANG=en_US.UTF-8 +ENV LANGUAGE=en_US:en +ENV LC_ALL=en_US.UTF-8 -ENV PATH="$PATH:/usr/diann-1.9.2" -ENV DIA_NN_PATH="/usr/diann-1.9.2" +# Download DIA-NN version +RUN wget https://github.com/vdemichev/DiaNN/releases/download/1.9.2/diann-1.9.2.Linux.zip -O diann-1.9.2.Linux.zip -WORKDIR /data/ +# Unzip the DIA-NN package +RUN unzip diann-1.9.2.Linux.zip + +# Set appropriate permissions for the DIA-NN folder +RUN chmod -R 775 /diann-1.9.2 + +# NOTE: It is entirely the user's responsibility to ensure compliance with DIA-NN license terms. +# Please review the licensing terms for DIA-NN before using or distributing this Docker image. \ No newline at end of file diff --git a/README.md b/README.md index 1e86940..188017d 100644 --- a/README.md +++ b/README.md @@ -39,5 +39,5 @@ docker build -t diann:1.9.2 . ### **Running the Container** ```bash -docker run -it diann:1.9.2 diann +docker run -it diann:1.9.2 ./diann-1.9.2/diann-linux ```