Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Running plasma datasets with the entrapment protein DB #241

Open
6 of 8 tasks
ypriverol opened this issue Jan 9, 2024 · 1 comment
Open
6 of 8 tasks

Running plasma datasets with the entrapment protein DB #241

ypriverol opened this issue Jan 9, 2024 · 1 comment
Assignees
@ypriverol
Labels
enhancement New feature or request plasma

Comments

@ypriverol
Copy link
Member

ypriverol commented Jan 9, 2024 •
edited
Loading

We have to re-run all the datasets in plasma with the entrapment strategy to make sure that the new algorithm for global q-value adjustment can be run. Datasets:

  • PXD039236
  • PXD004242
  • PXD017052 DIA
  • PXD017052 DDA
  • MSV000079033 ITRAQ
  • PXD013231 DDA
  • PXD013231 DIA
  • PXD039023
@ypriverol ypriverol added enhancement New feature or request plasma labels Jan 9, 2024
@ypriverol
Copy link
Member Author

This dataset PXD039236 is waiting for bigbio/quantms#337 (comment)

@ypriverol ypriverol mentioned this issue Jan 14, 2024
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@ypriverol ypriverol

Labels
enhancement New feature or request plasma
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@ypriverol @asierlarrea