fix: correct portal stats, remove DIA from quantms, fix duplicate pub

- portal-stats.json: updated to actual numbers (252 datasets, 4 collections,
  633K proteins, 500M PSMs) — was showing stale seed values
- tools.html: quantms description now DDA-only (removed "and DIA"),
  DIA is handled by quantmsdiann
- publications.html: removed Arecco et al. duplicate from Team tab
  (it's an external paper, stays in "Using quantms" tab only). Count 8→7.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Author: ypriverol

data/portal-stats.json

@@ -1,12 +1,9 @@
 {
-  "generated_at": "2026-04-10T00:00:00Z",
-  "datasets": 57,
-  "collections": 3,
-  "workflows": 4,
-  "quant_methods": 6,
-  "organisms": 5,
-  "proteins": 42000,
-  "peptides": 890000,
-  "psms": 45000000,
+  "generated_at": "2026-04-11T00:00:00Z",
+  "datasets": 252,
+  "collections": 4,
+  "organisms": 10,
+  "proteins": 633719,
+  "psms": 500511663,
   "source": "portal.quantms.org"
 }

publications.html

@@ -360,7 +360,7 @@ <h2>All Publications</h2>
       <input type="radio" name="pub-tabs" id="tab-using">
 
       <div class="tab-labels">
-        <label for="tab-team">Team Publications (8)</label>
+        <label for="tab-team">Team Publications (7)</label>
         <label for="tab-using">Using quantms (5)</label>
       </div>
 
@@ -376,15 +376,6 @@ <h4>Ibaqpy: A scalable Python package for baseline quantification in proteomics
             </div>
             <a href="https://doi.org/10.1016/j.jprot.2025.105440" class="pub-list-link" target="_blank" rel="noopener">View &rarr;</a>
           </li>
-          <li class="pub-list-item">
-            <span class="pub-year-badge">2024</span>
-            <div class="pub-list-info">
-              <h4>Alternative splicing decouples local from global PRC2 activity</h4>
-              <p class="pub-list-authors">Arecco N, et al.</p>
-              <p class="pub-list-journal"><em>Molecular Cell,</em> 84(6):1049-1061.e8.</p>
-            </div>
-            <a href="https://doi.org/10.1016/j.molcel.2024.02.011" class="pub-list-link" target="_blank" rel="noopener">View &rarr;</a>
-          </li>
           <li class="pub-list-item">
             <span class="pub-year-badge">2024</span>
             <div class="pub-list-info">

tools.html

@@ -325,7 +325,7 @@ <h2>Nextflow Pipelines</h2>
         <div class="tool-card-header" style="background: #409eff;">quantms</div>
         <div class="tool-card-body">
           <h3>quantms</h3>
-          <p class="tool-desc">A cloud-ready Nextflow pipeline for quantitative proteomics: DDA label-free, TMT/iTRAQ, and DIA workflows in a single framework.</p>
+          <p class="tool-desc">A cloud-ready Nextflow pipeline for DDA quantitative proteomics: label-free (LFQ) and isobaric labeling (TMT/iTRAQ) workflows.</p>
           <div class="tool-install"><span class="prompt">$</span> <span class="cmd">nextflow run bigbio/quantms -profile docker</span></div>
           <ul class="tool-features">
             <li>DDA-LFQ and DDA-ISO (TMT/iTRAQ) workflows in one pipeline</li>