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convert Changelog

Version 1.0

Closed issues:

  • Remove GA4GH protobuf converters #106

Merged and closed pull requests:

Version 0.14.0

Closed issues:

  • Deprecate GA4GH protobuf converters #104

Merged and closed pull requests:

Version 0.13.0

Closed issues:

  • Migrate CI from Travis to Github Actions #101
  • Update pom.xml url to Github repository #96

Merged and closed pull requests:

  • Remove Travis badge, update Maven version to 3.8.5 #103 (heuermh)
  • Migrate CI from Travis to Github Actions #102 (heuermh)
  • Roll back guice dependency version to 5.0.1 #100 (heuermh)
  • Update guice dependency version to 5.0.2, guava to 31.1-jre #99 (heuermh)
  • Update pom.xml url to Github repository #97 (heuermh)
  • Update bdg-formats dependency version to 0.17.0 #95 (heuermh)

Version 0.12.0

Closed issues:

  • Add transcript effect impact converter #91
  • Update bdg-formats dependency version to 0.16.0 #90

Merged and closed pull requests:

  • [CONVERT-91] Add transcript effect impact converter #93 (heuermh)
  • [FORMATS-90] Update bdg-formats dependency version to 0.16.0 #92 (heuermh)
  • Update htsjdk dependency version to 2.24.1, guava to 30.1.1-jre, commons-lang to 3.12 #89 (heuermh)

Version 0.11.0

Closed issues:

  • Is source and target class enough for Guice injection? #2

Merged and closed pull requests:

  • Update guice dependency version to 5.0.1, guava to 30.1-jre, junit to 4.13.2. #88 (heuermh)
  • Update htsjdk dependency version to 2.24.0 #87 (heuermh)
  • Update maven plugin dependency versions #86 (heuermh)
  • Bump junit from 4.13 to 4.13.1 #85 (dependabot[bot])

Version 0.10.0

Closed issues:

Merged and closed pull requests:

  • Update htsjdk dependency version to 2.23.0 #84 (heuermh)
  • Update htsjdk dependency version to 2.22.0 #83 (heuermh)

Version 0.8.0

Closed issues:

  • Bump bdg-formats dependency version to 0.14.0 #74

Merged and closed pull requests:

  • [CONVERT-74] Bump bdg-formats dependency version to 0.14.0 #75 (heuermh)

Version 0.6.0

Closed issues:

  • Configure Travis for continuous integration #66
  • Bump bdg-formats dependency to version 0.12.0 #62

Merged and closed pull requests:

  • Update bdg-formats dependency to version 0.12.0. #69 (heuermh)
  • Adding Travis CI badge to readme. #68 (heuermh)
  • Adding Travis CI configuration. #67 (heuermh)
  • Additional code style fixes. #65 (heuermh)

Version 0.5.0

Closed issues:

  • Unit tests fail due to surefire plugin issue with Debian/Ubuntu Java8 #59

Merged and closed pull requests:

  • Adding CHANGES.md #64 (heuermh)
  • added GA4GH Feature attributes parser #61 (akmorrow13)
  • Update maven-surefire-plugin version to 3.0.0-M1. #60 (heuermh)
  • Update bdg-formats dependency version to 0.11.4. #58 (heuermh)

Version 0.4.0

Closed issues:

  • Release version 0.4.0 #57
  • incorporate recordGroupSample into GA4GH schema #53
  • Add API documentation link and badge #52

Merged and closed pull requests:

  • Add Maven Central and API Documentation link badges. #56 (heuermh)
  • Adding GA4GH program, read group converters. #55 (heuermh)
  • Updating dependency versions, including htsjdk to 2.16.1. #54 (heuermh)

Version 0.3.0

Closed issues:

  • Release version 0.3.0. #51
  • GA4GH Alignment fails if mapq is None #49
  • Bump to HTSJDK 2.13.2 #47
  • Update bdg-formats dependency to version 0.11.3 #44
  • VerifyError in GA4GH AlignmentRecord Conversion #43

Merged and closed pull requests:

  • fixed null mapq error for convert-ga4gh #50 (akmorrow13)
  • [CONVERT-47] Bump to HTSJDK 2.13.2. #48 (heuermh)
  • Add null guards in ga4gh and fix feature ga4gh converter #40 (jpdna)

Version 0.2.0

Closed issues:

  • Release version 0.2.0 #36
  • Refactor Maven modules to separate dependencies #28
  • Import bdg-convert-ga4gh repository into new Maven module #27
  • Drop bdg- prefix from repository name #26

Merged and closed pull requests:

  • [CONVERT-26] Rename bdg-convert repo to convert. #37 (heuermh)
  • Adding multimodule build, migrating bdg-convert-ga4gh repo to new module. #29 (heuermh)