GetLabels.groovy

@Grapes([
  @Grab(group='org.semanticweb.elk', module='elk-owlapi', version='0.4.2'),
  @Grab(group='net.sourceforge.owlapi', module='owlapi-api', version='4.1.0'),
  @Grab(group='net.sourceforge.owlapi', module='owlapi-apibinding', version='4.1.0'),
  @Grab(group='net.sourceforge.owlapi', module='owlapi-impl', version='4.1.0'),
  @Grab(group='net.sourceforge.owlapi', module='owlapi-parsers', version='4.1.0'),
  @GrabConfig(systemClassLoader=true)
  ])

import org.semanticweb.owlapi.model.parameters.*
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.reasoner.*
import org.semanticweb.owlapi.model.*;
import org.semanticweb.owlapi.io.*;
import org.semanticweb.owlapi.owllink.*;
import org.semanticweb.owlapi.util.*;
import org.semanticweb.owlapi.search.*;
import org.semanticweb.elk.owlapi.ElkReasonerFactory;
import org.semanticweb.elk.owlapi.ElkReasonerConfiguration
import org.semanticweb.elk.reasoner.config.*
import java.util.*

OWLOntologyManager manager = OWLManager.createOWLOntologyManager()
OWLOntology ont = manager.loadOntologyFromOntologyDocument(
  new File("data/a.owl"))
OWLDataFactory dataFactory = manager.getOWLDataFactory()
ConsoleProgressMonitor progressMonitor = new ConsoleProgressMonitor()
OWLReasonerConfiguration config = new SimpleConfiguration(progressMonitor)
ElkReasonerFactory reasonerFactory = new ElkReasonerFactory()
OWLReasoner reasoner = reasonerFactory.createReasoner(ont, config)


new File("terms.txt").eachLine { line ->
    IRI iri = IRI.create("http://purl.obolibrary.org/obo/$line")
    OWLClass cl = dataFactory.getOWLClass(iri)
    for(OWLAnnotation a : EntitySearcher.getAnnotations(cl, ont, dataFactory.getRDFSLabel())) {
        OWLAnnotationValue value = a.getValue();
        if(value instanceof OWLLiteral) {
            println("\"" + cl.toString().substring(32, cl.toString().length() - 1) + "\", \\\\ " + ((OWLLiteral) value).getLiteral());
        }
    }
}