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BUG: paired-heatmap keep_top_samples option is broken #121

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nbokulich opened this issue Feb 7, 2020 · 0 comments
Open

BUG: paired-heatmap keep_top_samples option is broken #121

nbokulich opened this issue Feb 7, 2020 · 0 comments

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@nbokulich
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if keep_top_samples=False, get an error that "select_microbes is referenced before assignment". Looks like the alternative broke at some point and this line just needs an else statement:

mmvec/mmvec/heatmap.py

Lines 187 to 189 in a520b32

if keep_top_samples:
select_microbes = microbes_table[microbes_table.apply(
pd.Series.idxmax, axis=1).isin(features)]

reported in #120
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@nbokulich