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This repository has been archived by the owner on Nov 9, 2023. It is now read-only.
We downloaded clustered rDNA files from MG-RAST and we would like to annotate samples but the first step "split_libraries.py" is asking for mapping file for barcodes to demultiplex sequences. Since we don't have already demultiplexed sequences we would like to proceed to "pick_otu" step. How can we provide mapping file without using "split_libraries.py"
It was suggested elsewhere to prepare mock mapping file. However pick otuscript does not accept mapping file.
So, what is the proper way to process multiple files from MG-RAST?
The text was updated successfully, but these errors were encountered:
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We downloaded clustered rDNA files from MG-RAST and we would like to annotate samples but the first step "split_libraries.py" is asking for mapping file for barcodes to demultiplex sequences. Since we don't have already demultiplexed sequences we would like to proceed to "pick_otu" step. How can we provide mapping file without using "split_libraries.py"
It was suggested elsewhere to prepare mock mapping file. However pick otuscript does not accept mapping file.
So, what is the proper way to process multiple files from MG-RAST?
The text was updated successfully, but these errors were encountered: