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‎README.md‎

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[![](https://img.shields.io/conda/vn/bioconda/biobb_common?label=Conda)](https://anaconda.org/bioconda/biobb_common)
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[![](https://img.shields.io/conda/dn/bioconda/biobb_common?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_common)
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[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_common?tab=tags)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_common:5.1.0--pyhdfd78af_0)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_common:5.1.1--pyhdfd78af_0)
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[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)]()
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[![](https://img.shields.io/pypi/pyversions/biobb-common.svg?label=Python%20Versions)]()
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[latest API documentation](http://biobb-common.readthedocs.io/en/latest/).
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### Version
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v5.1.0 2025.1
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v5.1.1 2025.1
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### Copyright & Licensing
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This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU Horizon Europe [101093290](https://cordis.europa.eu/project/id/101093290), EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).

‎biobb_common/__init__.py‎

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name = "biobb_common"
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__all__ = ["generic"]
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__version__ = "5.1.0"
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__version__ = "5.1.1"
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class BioBBGlobalProperties(dict):

‎biobb_common/docs/source/change_log.md‎

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# Biobb_common ChangeLog
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## What's new in version [5.1.1](https://github.com/bioexcel/biobb_common/releases/tag/v5.1.1)?
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* [FEATURE] Add [global properties](https://biobb-common.readthedocs.io/en/latest/global_properties.html) shared by all the blocks.
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* [FEATURE] Automatic block argument parser from docstring.
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* [FEATURE] Automatic short flags -i/-o for blocks with only one input/output argument.
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* [FEATURE] Folder as inputs and outputs.
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* [FEATURE] Add new test fixture to check if a folder is not empty.
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* [FEATURE] Enable deleting temporal files while sandbox is disabled. Use BiobbObject.create_tmp_file to safely create temporary files.
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* [FEATURE] Add can_write_file_log property to toggle logging of file writes.
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## What's new in version [5.1.0](https://github.com/bioexcel/biobb_common/releases/tag/v5.1.0)?
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* [FEATURE] Add '#' to the list of lines considered as comments for xvg comparasion.

‎biobb_common/docs/source/conf.py‎

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# built documents.
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# The short X.Y version.
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version = u'5.1.0'
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version = u'5.1.1'
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# The full version, including alpha/beta/rc tags.
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release = u'2025.1'
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‎biobb_common/docs/source/readme.md‎

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[![](https://img.shields.io/conda/vn/bioconda/biobb_common?label=Conda)](https://anaconda.org/bioconda/biobb_common)
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[![](https://img.shields.io/conda/dn/bioconda/biobb_common?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_common)
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[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_common?tab=tags)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_common:5.1.0--pyhdfd78af_0)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_common:5.1.1--pyhdfd78af_0)
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[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)]()
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[![](https://img.shields.io/pypi/pyversions/biobb-common.svg?label=Python%20Versions)]()
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[latest API documentation](http://biobb-common.readthedocs.io/en/latest/).
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### Version
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v5.1.0 2025.1
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v5.1.1 2025.1
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### Copyright & Licensing
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This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU Horizon Europe [101093290](https://cordis.europa.eu/project/id/101093290), EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).

‎biobb_common/docs/source/schema.html‎

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"applicationSubCategory": "http://www.edamontology.org/topic_3892",
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"citation": "https://www.nature.com/articles/s41597-019-0177-4",
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"license": "https://www.apache.org/licenses/LICENSE-2.0",
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"softwareVersion": "5.1.0",
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"softwareVersion": "5.1.1",
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"applicationSuite": "BioBB BioExcel Building Blocks",
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"codeRepository": "https://github.com/bioexcel/biobb_common",
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"isAccessibleForFree": "True",

‎biobb_common/json_schemas/biobb_common.json‎

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"github": "https://github.com/bioexcel/biobb_common",
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"readthedocs": "https://biobb-common.readthedocs.io/en/latest/",
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"conda": "https://anaconda.org/bioconda/biobb_common",
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"docker": "https://quay.io/biocontainers/biobb_common:5.1.0--pyhdfd78af_0",
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"singularity": "https://depot.galaxyproject.org/singularity/biobb_common:5.1.0--pyhdfd78af_0",
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"version": "5.1.0",
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"docker": "https://quay.io/biocontainers/biobb_common:5.1.1--pyhdfd78af_0",
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"singularity": "https://depot.galaxyproject.org/singularity/biobb_common:5.1.1--pyhdfd78af_0",
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"version": "5.1.1",
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"tools": [
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{
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"block": "FolderTest",

‎references.jsonld‎

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"applicationCategory": "Computational Biology tool",
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"citation": "https://www.nature.com/articles/s41597-019-0177-4",
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"license": "https://www.apache.org/licenses/LICENSE-2.0",
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"softwareVersion": "5.1.0"
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"softwareVersion": "5.1.1"
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}

‎setup.py‎

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setuptools.setup(
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name="biobb_common",
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version="5.1.0",
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version="5.1.1",
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author="Biobb developers",
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author_email="[email protected]",
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description="Biobb_common is the base package required to use the biobb packages.",

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