From 38780161bda80ac5898a9c66b25316a81302a7ee Mon Sep 17 00:00:00 2001 From: SumirHPandit <46551795+sumirp@users.noreply.github.com> Date: Wed, 6 Sep 2023 19:39:27 +0530 Subject: [PATCH] Curated 4 mappings (sumir) --- src/biomappings/resources/mappings.tsv | 4 ++++ src/biomappings/resources/predictions.tsv | 4 ---- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/src/biomappings/resources/mappings.tsv b/src/biomappings/resources/mappings.tsv index 8dacf6b6..61abf659 100644 --- a/src/biomappings/resources/mappings.tsv +++ b/src/biomappings/resources/mappings.tsv @@ -8908,6 +8908,7 @@ mondo 0001688 toxic optic neuropathy skos:exactMatch mesh D000081028 Toxic Optic mondo 0002012 methylmalonic acidemia skos:exactMatch mesh C537358 Methylmalonic acidemia semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0002648 mammary Paget disease skos:exactMatch mesh D010144 Paget's Disease, Mammary semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0005161 human papilloma virus infection skos:exactMatch mesh D030361 Papillomavirus Infections semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +mondo 0005594 severe cutaneous adverse reaction skos:exactMatch mesh D002921 Cicatrix semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9 mondo 0005607 chronic bronchitis skos:exactMatch mesh D029481 Bronchitis, Chronic semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0006033 diffuse intrinsic pontine glioma skos:exactMatch mesh D000080443 Diffuse Intrinsic Pontine Glioma semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0006094 Askin tumor skos:exactMatch mesh C563168 Askin Tumor semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -8920,11 +8921,13 @@ mondo 0007440 major affective disorder 1 skos:exactMatch mesh C565111 Major Affe mondo 0007459 dilution, pigmentary skos:exactMatch mesh C566872 Dilution, Pigmentary semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0007547 epidermoid cysts skos:exactMatch mesh D004814 Epidermal Cyst semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0007578 esterase B skos:exactMatch mesh C049262 esterase B semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +mondo 0007608 desmoid tumor skos:exactMatch mesh D018222 Fibromatosis, Aggressive semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9 mondo 0007767 hyperparathyroidism 1 skos:exactMatch mesh C564166 Hyperparathyroidism 1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mondo 0007817 IgE responsiveness, atopic skos:exactMatch mesh C564133 Ige Responsiveness, Atopic semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0007909 familial multiple lipomatosis skos:exactMatch mesh D000071070 Familial Multiple Lipomatosis semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0007942 Mammastatin skos:exactMatch mesh C060120 mammastatin semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0008062 narcolepsy 1 skos:exactMatch mesh C563534 Narcolepsy 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +mondo 0008161 otodental syndrome skos:exactMatch mesh C563482 Otodental Dysplasia semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9 mondo 0008163 otofaciocervical syndrome skos:exactMatch mesh C563481 Otofaciocervical Syndrome semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0008197 parietal foramina 1 skos:exactMatch mesh C566827 Parietal Foramina 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0008273 actinic prurigo skos:exactMatch mesh C566780 Actinic Prurigo semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -8987,6 +8990,7 @@ mondo 0012425 corneal dystrophy, fuchs endothelial, 2 skos:exactMatch mesh C5354 mondo 0012484 prosopagnosia, hereditary skos:exactMatch mesh C537242 Prosopagnosia, hereditary semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0012522 diabetes mellitus, transient neonatal, 3 skos:exactMatch mesh C566432 Diabetes Mellitus, Transient Neonatal, 3 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0012548 Kostmann syndrome skos:exactMatch mesh C537592 Neutropenia, Severe Congenital, Autosomal Recessive 3 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +mondo 0012914 chromosome 1q21.1 deletion syndrome skos:exactMatch mesh C567291 Chromosome 1q21.1 Deletion Syndrome, 1.35-Mb semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9 mondo 0013129 cone dystrophy 4 skos:exactMatch mesh C567758 Cone Dystrophy 4 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0013199 tuberous sclerosis 2 skos:exactMatch mesh C566021 Tuberous Sclerosis 2 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mondo 0013203 corneal dystrophy, Fuchs endothelial, 3 skos:exactMatch mesh C567678 Corneal Dystrophy, Fuchs Endothelial, 3 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/predictions.tsv b/src/biomappings/resources/predictions.tsv index 3fc56124..4b003db9 100644 --- a/src/biomappings/resources/predictions.tsv +++ b/src/biomappings/resources/predictions.tsv @@ -38730,14 +38730,11 @@ mesh D066259 Betacellulin skos:exactMatch hgnc 1121 BTC semapv:LexicalMatching 0 mesh D066261 Epigen skos:exactMatch hgnc 17470 EPGN semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/492ede/scripts/import_gilda_mappings.py mondo 0001115 familial polycythemia skos:exactMatch mesh C536842 Polycythemia, primary familial and congenital semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0002814 adrenal carcinoma skos:exactMatch mesh D018268 Adrenocortical Carcinoma semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py -mondo 0005594 severe cutaneous adverse reaction skos:exactMatch mesh D002921 Cicatrix semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0006209 fibroblastic neoplasm skos:exactMatch mesh D005354 Fibrosarcoma semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0007116 hereditary neurocutaneous angioma skos:exactMatch mesh C536364 Angioma hereditary neurocutaneous semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py -mondo 0007608 desmoid tumor skos:exactMatch mesh D018222 Fibromatosis, Aggressive semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0007614 congenital fibrosis of extraocular muscles skos:exactMatch mesh C580012 Congenital Fibrosis of the Extraocular Muscles semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0007794 hypogonadotropic hypogonadism 7 with or without anosmia skos:exactMatch mesh C562785 Idiopathic Hypogonadotropic Hypogonadism semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0007876 laryngeal abductor paralysis skos:exactMatch mesh C536354 Vocal cord dysfunction familial semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py -mondo 0008161 otodental syndrome skos:exactMatch mesh C563482 Otodental Dysplasia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0008718 Morvan syndrome skos:exactMatch mesh D020385 Myokymia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0008751 corticosterone methyloxidase type 1 deficiency skos:exactMatch mesh C537806 18-Hydroxylase deficiency semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0008888 Williams-Campbell syndrome skos:exactMatch mesh D055089 Tracheobronchomalacia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py @@ -38754,7 +38751,6 @@ mondo 0010831 familial caudal dysgenesis skos:exactMatch mesh C535879 Rudd Klime mondo 0010880 telangiectasia, hereditary hemorrhagic, type 2 skos:exactMatch mesh C537139 Osler-rendu-weber syndrome 2 semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0011232 migraine, familial hemiplegic, 2 skos:exactMatch mesh C537246 Hemiplegic migraine, familial type 2 semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0011898 Charcot-Marie-Tooth disease, axonal, with vocal cord paresis, autosomal recessive skos:exactMatch mesh C539595 Charcot-Marie-Tooth disease, Type 4A, axonal form semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py -mondo 0012914 chromosome 1q21.1 deletion syndrome skos:exactMatch mesh C567291 Chromosome 1q21.1 Deletion Syndrome, 1.35-Mb semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0012937 Diamond-Blackfan anemia 6 skos:exactMatch mesh C538442 Aase Smith syndrome 2 semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0013996 focal facial dermal dysplasia type II skos:exactMatch mesh C536385 Facial ectodermal dysplasia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py mondo 0014945 myopathy, distal, with rimmed vacuoles skos:exactMatch mesh C536816 Distal myopathy, Nonaka type semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py