From 8fb884643a83263cf48afd5e4127557ca3f53f89 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Tue, 4 Jul 2023 17:45:46 +0200 Subject: [PATCH] Curate more UBERON-BTO mappings --- src/biomappings/resources/incorrect.tsv | 2 ++ src/biomappings/resources/mappings.tsv | 8 ++++++++ src/biomappings/resources/predictions.tsv | 14 -------------- src/biomappings/resources/unsure.tsv | 4 ++++ 4 files changed, 14 insertions(+), 14 deletions(-) diff --git a/src/biomappings/resources/incorrect.tsv b/src/biomappings/resources/incorrect.tsv index 3289920a..8e73e281 100644 --- a/src/biomappings/resources/incorrect.tsv +++ b/src/biomappings/resources/incorrect.tsv @@ -1390,6 +1390,8 @@ reactome R-XTR-8877627 Vitamin E skos:exactMatch mesh D014810 Vitamin E semapv:M reactome R-XTR-9664873 Pexophagy speciesSpecific go GO:0030242 autophagy of peroxisome semapv:ManualMappingCuration orcid:0000-0003-4423-4370 reactome R-XTR-983189 Kinesins speciesSpecific fplx Kinesin Kinesin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 uberon UBERON:0000104 life cycle skos:exactMatch mesh D008018 Life Cycle Stages semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0012245 silk skos:exactMatch bto BTO:0002854 corn silk semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0022469 primary olfactory cortex skos:exactMatch mesh D066194 Olfactory Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:2001977 pad skos:exactMatch mesh D058729 Peripheral Arterial Disease semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/mappings.tsv b/src/biomappings/resources/mappings.tsv index 4afd3dec..b2d67e44 100644 --- a/src/biomappings/resources/mappings.tsv +++ b/src/biomappings/resources/mappings.tsv @@ -9313,11 +9313,13 @@ uberon UBERON:0001862 vestibular labyrinth skos:exactMatch mesh D014722 Vestibul uberon UBERON:0001863 scala vestibuli skos:exactMatch mesh D054738 Scala Vestibuli semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001883 olfactory tubercle skos:exactMatch mesh D066208 Olfactory Tubercle semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001907 zona incerta skos:exactMatch mesh D065820 Zona Incerta semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0001931 lateral preoptic nucleus skos:exactMatch bto BTO:0006166 nucleus preopticus lateralis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0001944 pretectal region skos:exactMatch mesh D066250 Pretectal Region semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001947 red nucleus skos:exactMatch bto BTO:0006329 red nucleus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0001977 blood serum skos:exactMatch mesh D044967 Serum semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001995 fibrocartilage skos:exactMatch mesh D051445 Fibrocartilage semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002020 gray matter skos:exactMatch mesh D066128 Gray Matter semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002035 medial preoptic nucleus skos:exactMatch bto BTO:0006167 nucleus preopticus medialis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002043 dorsal raphe nucleus skos:exactMatch mesh D065847 Dorsal Raphe Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002062 endocardial cushion skos:exactMatch mesh D054089 Endocardial Cushions semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002120 pronephros skos:exactMatch mesh D060910 Pronephros semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9337,20 +9339,24 @@ uberon UBERON:0002373 palatine tonsil skos:exactMatch mesh D014066 Palatine Tons uberon UBERON:0002396 vomer skos:exactMatch mesh D055172 Vomer semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002409 pericardial fluid skos:exactMatch mesh D000069236 Pericardial Fluid semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002412 vertebra skos:exactMatch bto BTO:0006196 vertebra semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 +uberon UBERON:0002430 lateral hypothalamic area skos:exactMatch bto BTO:0006481 lateral hypothalamus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002469 esophagus mucosa skos:exactMatch mesh D000071041 Esophageal Mucosa semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002493 uterine artery skos:exactMatch mesh D055988 Uterine Artery semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002540 lateral line system skos:exactMatch mesh D053403 Lateral Line System semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002548 larva skos:exactMatch mesh D007814 Larva semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002600 limbic lobe skos:exactMatch mesh D065726 Limbic Lobe semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002623 cerebral peduncle skos:exactMatch mesh D065850 Cerebral Peduncle semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002625 median preoptic nucleus skos:exactMatch bto BTO:0006168 nucleus preopticus medianus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002631 cerebral crus skos:exactMatch mesh D065843 Cerebral Crus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002639 midbrain reticular formation skos:exactMatch mesh D066265 Midbrain Reticular Formation semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002682 abducens nucleus skos:exactMatch mesh D065827 Abducens Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002684 nucleus raphe obscurus skos:exactMatch mesh D065849 Nucleus Raphe Obscurus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002689 supraoptic crest skos:exactMatch bto BTO:0006268 organum vasculosum laminae terminalis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002707 corticospinal tract skos:exactMatch bto BTO:0006132 corticospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002714 rubrospinal tract skos:exactMatch bto BTO:0006159 rubrospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002743 basal forebrain skos:exactMatch mesh D066187 Basal Forebrain semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002751 inferior temporal gyrus skos:exactMatch bto BTO:0006175 inferior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 +uberon UBERON:0002752 olivocerebellar tract skos:exactMatch bto BTO:0006157 olivocerebellar fiber system semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002769 superior temporal gyrus skos:exactMatch bto BTO:0006177 superior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002771 middle temporal gyrus skos:exactMatch bto BTO:0006176 middle temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002883 central amygdaloid nucleus skos:exactMatch mesh D066274 Central Amygdaloid Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9377,6 +9383,7 @@ uberon UBERON:0003911 choroid plexus epithelium skos:exactMatch bto BTO:0006008 uberon UBERON:0003937 reproductive gland skos:exactMatch bto BTO:0006162 reproductive gland semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0004016 dermatome skos:exactMatch bto BTO:0006248 dermatome semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0004341 primitive streak skos:exactMatch mesh D054240 Primitive Streak semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0004637 otic capsule skos:exactMatch bto BTO:0005981 auditory capsule semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0004676 spinal cord lateral horn skos:exactMatch mesh D066152 Spinal Cord Lateral Horn semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0004720 cerebellar vermis skos:exactMatch mesh D065814 Cerebellar Vermis semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0004725 piriform cortex skos:exactMatch mesh D066195 Piriform Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9388,6 +9395,7 @@ uberon UBERON:0005408 circumventricular organ skos:exactMatch bto BTO:0006267 ci uberon UBERON:0005408 circumventricular organ skos:exactMatch mesh D066280 Circumventricular Organs semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005438 coronary sinus skos:exactMatch mesh D054326 Coronary Sinus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005456 jugular foramen skos:exactMatch mesh D000080869 Jugular Foramina semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0005498 primitive heart tube skos:exactMatch bto BTO:0006179 cardiac tube semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0005631 extraembryonic membrane skos:exactMatch mesh D005321 Extraembryonic Membranes semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005742 adventitia skos:exactMatch mesh D063194 Adventitia semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005777 glomerular basement membrane skos:exactMatch mesh D050533 Glomerular Basement Membrane semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/predictions.tsv b/src/biomappings/resources/predictions.tsv index 4cbedcf5..82f24172 100644 --- a/src/biomappings/resources/predictions.tsv +++ b/src/biomappings/resources/predictions.tsv @@ -38696,11 +38696,9 @@ uberon UBERON:0000016 endocrine pancreas skos:exactMatch mesh D007515 Islets of uberon UBERON:0000044 dorsal root ganglion skos:exactMatch mesh D005727 Ganglia, Spinal semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0000167 oral cavity skos:exactMatch mesh D009055 Mouth semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0000341 throat skos:exactMatch mesh D010614 Pharynx semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0000990 reproductive system skos:exactMatch mesh D005835 Genitalia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001009 circulatory system skos:exactMatch mesh D002319 Cardiovascular System semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001173 biliary tree skos:exactMatch mesh D001659 Biliary Tract semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0001268 peritoneal fluid skos:exactMatch mesh D001202 Ascitic Fluid semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001377 quadriceps femoris skos:exactMatch mesh D052097 Quadriceps Muscle semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001439 compact bone tissue skos:exactMatch mesh D000071538 Cortical Bone semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38710,11 +38708,9 @@ uberon UBERON:0001683 jugal bone skos:exactMatch mesh D015050 Zygoma semapv:Lexi uberon UBERON:0001742 epiglottic cartilage skos:exactMatch mesh D004825 Epiglottis semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001797 vitreous humor skos:exactMatch mesh D014822 Vitreous Body semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001870 frontal cortex skos:exactMatch mesh D005625 Frontal Lobe semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0001931 lateral preoptic nucleus skos:exactMatch bto BTO:0006166 nucleus preopticus lateralis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0001943 midbrain tegmentum skos:exactMatch mesh D013681 Tegmentum Mesencephali semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001965 substantia nigra pars compacta skos:exactMatch mesh D065842 Pars Compacta semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001966 substantia nigra pars reticulata skos:exactMatch mesh D065841 Pars Reticulata semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002035 medial preoptic nucleus skos:exactMatch bto BTO:0006167 nucleus preopticus medialis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002072 hypodermis skos:exactMatch mesh D040521 Subcutaneous Tissue semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002090 postcranial axial skeleton skos:exactMatch mesh D013131 Spine semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002101 limb skos:exactMatch mesh D005121 Extremities semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38723,18 +38719,13 @@ uberon UBERON:0002190 subcutaneous adipose tissue skos:exactMatch mesh D015434 P uberon UBERON:0002207 xiphoid process skos:exactMatch mesh D014989 Xiphoid Bone semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002295 scala media skos:exactMatch mesh D003053 Cochlear Duct semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002393 pharyngotympanic tube skos:exactMatch mesh D005064 Eustachian Tube semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002397 maxilla skos:exactMatch bto BTO:0006516 invertebrate maxilla semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py -uberon UBERON:0002430 lateral hypothalamic area skos:exactMatch bto BTO:0006481 lateral hypothalamus semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002590 prepyriform area skos:exactMatch mesh D066195 Piriform Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002625 median preoptic nucleus skos:exactMatch bto BTO:0006168 nucleus preopticus medianus semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002633 motor nucleus of trigeminal nerve skos:exactMatch mesh D066266 Trigeminal Motor Nucleus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002656 periamygdaloid area skos:exactMatch mesh D066277 Periamygdaloid Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002689 supraoptic crest skos:exactMatch bto BTO:0006268 organum vasculosum laminae terminalis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002689 supraoptic crest skos:exactMatch mesh D066278 Organum Vasculosum semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002704 metathalamus skos:exactMatch mesh D005829 Geniculate Bodies semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002705 midline nuclear group skos:exactMatch mesh D020644 Midline Thalamic Nuclei semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002726 cervical spinal cord skos:exactMatch mesh D066193 Cervical Cord semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002752 olivocerebellar tract skos:exactMatch bto BTO:0006157 olivocerebellar fiber system semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002754 predorsal bundle skos:exactMatch mesh D065844 Tectospinal Fibers semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002776 ventral nuclear group skos:exactMatch mesh D020651 Ventral Thalamic Nuclei semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002895 secondary olfactory cortex skos:exactMatch mesh D018728 Entorhinal Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38742,10 +38733,8 @@ uberon UBERON:0002967 cingulate gyrus skos:exactMatch mesh D006179 Gyrus Cinguli uberon UBERON:0003011 facial motor nucleus skos:exactMatch mesh D065828 Facial Nucleus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0003128 cranium skos:exactMatch mesh D012886 Skull semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0004550 gastroesophageal sphincter skos:exactMatch mesh D049630 Esophageal Sphincter, Lower semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0004637 otic capsule skos:exactMatch bto BTO:0005981 auditory capsule semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0005343 cortical plate skos:exactMatch mesh D002540 Cerebral Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0005366 olfactory lobe skos:exactMatch mesh D066194 Olfactory Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0005498 primitive heart tube skos:exactMatch bto BTO:0006179 cardiac tube semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0005902 occipital region skos:exactMatch mesh D009778 Occipital Lobe semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0006098 basal nuclear complex skos:exactMatch mesh D001479 Basal Ganglia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0006514 pallidum skos:exactMatch mesh D005917 Globus Pallidus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38759,7 +38748,6 @@ uberon UBERON:0007641 trigeminal nuclear complex skos:exactMatch mesh D014278 Tr uberon UBERON:0008275 carapace skos:exactMatch mesh D060105 Animal Shells semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0008969 dental follicle skos:exactMatch mesh D003795 Dental Sac semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0009040 deep circumflex iliac artery skos:exactMatch mesh D007083 Iliac Artery semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0009201 nephric duct skos:exactMatch bto BTO:0005990 mesonephric duct semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0009951 main olfactory bulb skos:exactMatch mesh D009830 Olfactory Bulb semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0011117 superior tibiofibular joint skos:exactMatch mesh D007719 Knee Joint semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0011132 intercarpal joint skos:exactMatch mesh D050824 Carpal Joints semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38770,8 +38758,6 @@ uberon UBERON:0016538 temporal cortex skos:exactMatch mesh D013702 Temporal Lobe uberon UBERON:0018141 anterior perforated substance skos:exactMatch mesh D066208 Olfactory Tubercle semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:2000006 ball skos:exactMatch mesh D015452 Precursor B-Cell Lymphoblastic Leukemia-Lymphoma semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:2000188 corpus cerebelli skos:exactMatch mesh D002531 Cerebellum semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:2002053 bony plate skos:exactMatch bto BTO:0000967 osseous plate semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py -uberon UBERON:2002116 epibranchial organ skos:exactMatch bto BTO:0004195 pharyngeal organ semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:3011045 gasserian ganglion skos:exactMatch mesh D012668 Trigeminal Ganglion semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:3011048 genital system skos:exactMatch mesh D005835 Genitalia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py vido 0001123 viral disease skos:exactMatch doid DOID:934 viral infectious disease semapv:LexicalMatching 0.549371263656978 mira diff --git a/src/biomappings/resources/unsure.tsv b/src/biomappings/resources/unsure.tsv index 41953655..d7e0cf8d 100644 --- a/src/biomappings/resources/unsure.tsv +++ b/src/biomappings/resources/unsure.tsv @@ -81,6 +81,10 @@ mesh D059268 Atrophic Vaginitis skos:exactMatch doid DOID:11968 postmenopausal a mesh D063306 Mitochondrial Degradation skos:exactMatch go GO:0000423 mitophagy semapv:ManualMappingCuration orcid:0000-0003-4423-4370 obi OBI:0000430 plasmid skos:exactMatch ncbitaxon 45202 unidentified plasmid semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.778 obi OBI:0000737 cloning vector skos:exactMatch ncbitaxon 45196 unidentified cloning vector semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.778 +uberon UBERON:0002397 maxilla skos:exactMatch bto BTO:0006516 invertebrate maxilla semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:0009201 nephric duct skos:exactMatch bto BTO:0005990 mesonephric duct semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:2002053 bony plate skos:exactMatch bto BTO:0000967 osseous plate semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:2002116 epibranchial organ skos:exactMatch bto BTO:0004195 pharyngeal organ semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 vo 0000491 active immunization skos:exactMatch mesh D014611 Vaccination semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556 vo 0005243 CoviVac skos:exactMatch mesh C000721867 COVI-VAC semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.7621109049680478 vo 0005246 COVIVAC skos:exactMatch mesh C000721867 COVI-VAC semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.7775716347144919