From ad0cf8525ff395e218cd3bb768e44ea3c952b288 Mon Sep 17 00:00:00 2001 From: Sangeetha Vempati Date: Wed, 23 Aug 2023 00:03:35 -0400 Subject: [PATCH] Curated 5 mappings (sangeethavempati) --- src/biomappings/resources/incorrect.tsv | 3 +++ src/biomappings/resources/mappings.tsv | 2 ++ src/biomappings/resources/predictions.tsv | 5 ----- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/src/biomappings/resources/incorrect.tsv b/src/biomappings/resources/incorrect.tsv index 1d62875f..4c72d001 100644 --- a/src/biomappings/resources/incorrect.tsv +++ b/src/biomappings/resources/incorrect.tsv @@ -613,6 +613,7 @@ mesh C536277 Idiopathic dilation cardiomyopathy skos:exactMatch doid DOID:011042 mesh C536300 Partington X-linked mental retardation syndrome skos:exactMatch doid DOID:14744 Partington syndrome semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C536439 Corneal endothelial dystrophy type 2 skos:exactMatch doid DOID:0110855 posterior polymorphous corneal dystrophy 1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C536645 Pemphigus vulgaris, familial skos:exactMatch doid DOID:0060851 pemphigus vulgaris semapv:ManualMappingCuration orcid:0000-0003-1307-2508 +mesh C537068 Focal facial dermal dysplasia skos:exactMatch hp HP:0011336 Bitemporal forceps marks semapv:ManualMappingCuration web semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py 0.95 mesh C537137 Orstavik Lindemann Solberg syndrome skos:exactMatch doid DOID:0111591 congenital heart defects, hamartomas of tongue, and polysyndactyly semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C537519 Schwartz-Lelek syndrome skos:exactMatch doid DOID:0080033 craniometaphyseal dysplasia semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C537996 Dysgnathia complex skos:exactMatch doid DOID:0060341 agnathia-otocephaly complex semapv:ManualMappingCuration orcid:0000-0003-1307-2508 @@ -681,9 +682,11 @@ mesh D003884 Dermoid Cyst skos:exactMatch doid DOID:5117 dermoid cyst of ovary s mesh D003924 Diabetes Mellitus, Type 2 skos:exactMatch doid DOID:0050524 maturity-onset diabetes of the young semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh D003925 Diabetic Angiopathies skos:exactMatch doid DOID:10182 diabetic peripheral angiopathy semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh D004407 Dysgerminoma skos:exactMatch doid DOID:5511 dysgerminoma of ovary semapv:ManualMappingCuration orcid:0000-0003-1307-2508 +mesh D004408 Dysgeusia skos:exactMatch hp HP:0031249 Parageusia semapv:ManualMappingCuration web semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py 0.95 mesh D004410 Dyslexia skos:exactMatch doid DOID:13365 reading disorder semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh D004697 Endocarditis, Bacterial skos:exactMatch doid DOID:0060000 infective endocarditis semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mesh D004932 Esophageal and Gastric Varices skos:exactMatch doid DOID:112 esophageal varix semapv:ManualMappingCuration orcid:0000-0003-1307-2508 +mesh D005058 Eunuchism skos:exactMatch hp HP:0008720 Primary testicular failure semapv:ManualMappingCuration web semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py 0.95 mesh D005234 Fatty Liver skos:exactMatch efo 0008527 steatosis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mesh D005319 Fetal Hemoglobin skos:exactMatch efo 0004576 fetal hemoglobin measurement semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mesh D005351 Fibromatosis, Gingival skos:exactMatch doid DOID:0060466 gingival fibromatosis semapv:ManualMappingCuration orcid:0000-0003-1307-2508 diff --git a/src/biomappings/resources/mappings.tsv b/src/biomappings/resources/mappings.tsv index a4aaa95c..f8563968 100644 --- a/src/biomappings/resources/mappings.tsv +++ b/src/biomappings/resources/mappings.tsv @@ -5061,6 +5061,7 @@ mesh C537210 Knuckle pads, leuconychia and sensorineural deafness skos:exactMatc mesh C537213 Kohlschutter Tonz syndrome skos:exactMatch doid DOID:0111668 Kohlschutter-Tonz syndrome semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C537218 Saccharopinuria skos:exactMatch hp HP:0034028 Saccharopinuria semapv:ManualMappingCuration orcid:0000-0001-9439-5346 semapv:LexicalMatching generate_hp_mesh_mappings.py 0.9 mesh C537227 Sakati syndrome skos:exactMatch doid DOID:0060359 Sakati-Nyhan syndrome semapv:ManualMappingCuration orcid:0000-0003-1307-2508 +mesh C537236 Sarcosinemia skos:exactMatch hp HP:0010896 Hypersarcosinemia semapv:ManualMappingCuration web semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py 0.95 mesh C537247 Hemochromatosis, type 2 skos:exactMatch doid DOID:0111034 hemochromatosis type 2 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C537248 Hemochromatosis, type 3 skos:exactMatch doid DOID:0111030 hemochromatosis type 3 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh C537249 Hemochromatosis, type 4 skos:exactMatch doid DOID:0111028 hemochromatosis type 4 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 @@ -7068,6 +7069,7 @@ mesh D005283 Fentanyl skos:exactMatch chebi CHEBI:119915 fentanyl semapv:ManualM mesh D005285 Fermentation skos:exactMatch go GO:0006113 fermentation semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mesh D005306 Fertilization skos:exactMatch go GO:0009566 fertilization semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mesh D005316 Fetal Distress skos:exactMatch hp HP:0025116 Fetal distress semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +mesh D005330 Fetofetal Transfusion skos:exactMatch hp HP:0031110 Twin-to-twin transfusion semapv:ManualMappingCuration web semapv:LexicalMatching generate_hp_mesh_mappings.py 0.9 mesh D005342 Fibrinolysis skos:exactMatch go GO:0042730 fibrinolysis semapv:ManualMappingCuration orcid:0000-0001-9439-5346 mesh D005348 Fibrocystic Breast Disease skos:exactMatch doid DOID:5998 microglandular adenosis semapv:ManualMappingCuration orcid:0000-0003-1307-2508 mesh D005350 Fibroma skos:exactMatch doid DOID:0050871 fibroma semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/predictions.tsv b/src/biomappings/resources/predictions.tsv index 4adccab7..2a6cd238 100644 --- a/src/biomappings/resources/predictions.tsv +++ b/src/biomappings/resources/predictions.tsv @@ -24584,7 +24584,6 @@ mesh C536980 Transient erythroblastopenia of childhood skos:exactMatch ncit C131 mesh C537007 Kaposiform Hemangioendothelioma skos:exactMatch ncit C27510 Kaposiform Hemangioendothelioma semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537029 Lipomatous hemangiopericytoma skos:exactMatch ncit C27499 Lipomatous Hemangiopericytoma semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537048 Allanson Pantzar McLeod syndrome skos:exactMatch hp HP:0008660 Renotubular dysgenesis semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py -mesh C537068 Focal facial dermal dysplasia skos:exactMatch hp HP:0011336 Bitemporal forceps marks semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537079 Bare lymphocyte syndrome 2 skos:exactMatch ncit C171268 Bare Lymphocyte Syndrome Type 2 semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537080 Baritosis skos:exactMatch ncit C34410 Baritosis semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537108 Chromosome 21 monosomy skos:exactMatch ncit C36469 Monosomy 21 semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py @@ -24595,7 +24594,6 @@ mesh C537168 Papillorenal syndrome skos:exactMatch ncit C123230 Renal Coloboma S mesh C537180 Familial paroxysmal dystonia skos:exactMatch doid DOID:0090053 episodic kinesigenic dyskinesia 1 semapv:LexicalMatching 0.9 generate_doid_mesh_mappings.py mesh C537206 Spinocerebellar Ataxia 29 skos:exactMatch hp HP:0002335 Agenesis of cerebellar vermis semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537234 Sandifer syndrome skos:exactMatch ncit C113397 Sandifer's Syndrome semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py -mesh C537236 Sarcosinemia skos:exactMatch hp HP:0010896 Hypersarcosinemia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537256 Vascular purpura skos:exactMatch ncit C35499 Vascular Purpura semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537267 Langer mesomelic dysplasia skos:exactMatch ncit C126876 Langer Mesomelic Dysplasia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh C537297 Autosomal Dominant Lateral Temporal Lobe Epilepsy skos:exactMatch ncit C141441 Autosomal Dominant Lateral Temporal Lobe Epilepsy semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py @@ -29248,7 +29246,6 @@ mesh D004397 Fonofos skos:exactMatch ncit C163659 Fonofos semapv:LexicalMatching mesh D004400 Dyphylline skos:exactMatch chebi CHEBI:4728 dyphylline semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D004402 Dysautonomia, Familial skos:exactMatch ncit C84706 Familial Dysautonomia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D004404 Dysentery, Amebic skos:exactMatch ncit C34558 Amebic Colitis semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py -mesh D004408 Dysgeusia skos:exactMatch hp HP:0031249 Parageusia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D004410 Dyslexia skos:exactMatch ncit C96410 Dyslexia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D004413 Dysostoses skos:exactMatch ncit C34560 Dysostosis semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D004416 Dysplastic Nevus Syndrome skos:exactMatch ncit C7584 Dysplastic Nevus Syndrome semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py @@ -29554,7 +29551,6 @@ mesh D005051 Eubacterium skos:exactMatch ncit C86383 Eubacterium semapv:LexicalM mesh D005052 Eucalyptus skos:exactMatch ncit C72308 Eucalyptus globulus semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005054 Eugenol skos:exactMatch chebi CHEBI:4917 eugenol semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005057 Eukaryotic Cells skos:exactMatch ncit C12596 Eukaryotic Cells semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py -mesh D005058 Eunuchism skos:exactMatch hp HP:0008720 Primary testicular failure semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005060 Europe skos:exactMatch ncit C26274 Europe semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005062 European Union skos:exactMatch ncit C45252 European Union semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005063 Europium skos:exactMatch chebi CHEBI:32999 europium atom semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py @@ -29677,7 +29673,6 @@ mesh D005317 Fetal Growth Retardation skos:exactMatch ncit C114875 Fetus Small f mesh D005318 Fetal Heart skos:exactMatch ncit C34167 Fetal Heart semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005320 Fetal Macrosomia skos:exactMatch hp HP:0001520 Large for gestational age semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/492ede/scripts/import_gilda_mappings.py mesh D005320 Fetal Macrosomia skos:exactMatch ncit C113486 Fetal Macrosomia semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py -mesh D005330 Fetofetal Transfusion skos:exactMatch hp HP:0031110 Twin-to-twin transfusion semapv:LexicalMatching 0.9 generate_hp_mesh_mappings.py mesh D005330 Fetofetal Transfusion skos:exactMatch ncit C113824 Twin-Twin Transfusion Syndrome semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005331 Fetomaternal Transfusion skos:exactMatch ncit C113149 Fetal-Maternal Hemorrhage semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py mesh D005333 Fetus skos:exactMatch ncit C13235 Fetus semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py