diff --git a/src/biomappings/resources/incorrect.tsv b/src/biomappings/resources/incorrect.tsv index 9371bcbf..8e73e281 100644 --- a/src/biomappings/resources/incorrect.tsv +++ b/src/biomappings/resources/incorrect.tsv @@ -20,9 +20,14 @@ agrovoc 7b960f69 rainwater harvesting skos:exactMatch agro 00000589 water harves agrovoc 8446 working animals skos:exactMatch agro 00002004 draft animal role semapv:ManualMappingCuration orcid:0000-0002-2627-0696 agrovoc fdfbb37f parcels skos:exactMatch agro 00000301 agricultural experimental plot semapv:ManualMappingCuration orcid:0000-0002-2627-0696 apollosv 00000094 community skos:exactMatch ncit C16453 Community semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +apollosv 00000172 susceptibility skos:exactMatch pato PATO:0001043 susceptibility toward semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556 apollosv 00000340 agonism skos:exactMatch nbo 0000015 aggressive behavior semapv:ManualMappingCuration orcid:0000-0003-4423-4370 apollosv 00000340 agonism skos:exactMatch nbo 0000121 agonistic behavior semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +apollosv 00000496 ORCID skos:exactMatch ncit C188272 ORCID semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.7777777777777778 +bto BTO:0002830 DB-1 cell skos:exactMatch cl CL:4033027 diffuse bipolar 1 cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.555 +bto BTO:0004500 R1 cell skos:exactMatch cl CL:0000687 R1 photoreceptor cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005825 ctenidium skos:exactMatch ncbitaxon 90308 Ctenidium semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.762 +bto BTO:0006359 TEX cell skos:exactMatch cl CL:0011025 exhausted T cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.549 ccle 697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE 697 skos:exactMatch cellosaurus CVCL_8056 697-mel semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle A204_SOFT_TISSUE A-204 skos:exactMatch cellosaurus CVCL_1N55 Urd-B semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle ABC1_LUNG ABC-1 skos:exactMatch cellosaurus CVCL_ZB62 AbC1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 @@ -1385,6 +1390,8 @@ reactome R-XTR-8877627 Vitamin E skos:exactMatch mesh D014810 Vitamin E semapv:M reactome R-XTR-9664873 Pexophagy speciesSpecific go GO:0030242 autophagy of peroxisome semapv:ManualMappingCuration orcid:0000-0003-4423-4370 reactome R-XTR-983189 Kinesins speciesSpecific fplx Kinesin Kinesin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 uberon UBERON:0000104 life cycle skos:exactMatch mesh D008018 Life Cycle Stages semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0012245 silk skos:exactMatch bto BTO:0002854 corn silk semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0022469 primary olfactory cortex skos:exactMatch mesh D066194 Olfactory Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:2001977 pad skos:exactMatch mesh D058729 Peripheral Arterial Disease semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/mappings.tsv b/src/biomappings/resources/mappings.tsv index ca31c086..b2d67e44 100644 --- a/src/biomappings/resources/mappings.tsv +++ b/src/biomappings/resources/mappings.tsv @@ -182,41 +182,68 @@ bto BTO:0002900 monocyte-derived dendritic cell skos:exactMatch cl CL:0011031 mo bto BTO:0003123 microvascular endothelial cell skos:exactMatch cl CL:2000008 microvascular endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0003164 cholangiocyte skos:exactMatch cl CL:1000488 cholangiocyte semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0003636 brain microvascular endothelial cell skos:exactMatch cl CL:2000044 brain microvascular endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0003697 endometrial stromal cell skos:exactMatch cl CL:0002255 stromal cell of endometrium semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0003742 synoviocyte skos:exactMatch cl CL:0000214 synovial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0003805 alpha-motoneuron skos:exactMatch cl CL:0008038 alpha motor neuron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.54 bto BTO:0003825 neural crest cell skos:exactMatch cl CL:0011012 neural crest cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0003861 inflammatory cell skos:exactMatch cl CL:0009002 inflammatory cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0003982 retinal stem cell skos:exactMatch cl CL:4023129 retinoblast semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0004122 bone marrow stromal cell skos:exactMatch cl CL:0010001 stromal cell of bone marrow semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0004238 interstitial cell skos:exactMatch cl CL:4030031 interstitial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004295 umbilical artery endothelial cell skos:exactMatch cl CL:2000052 umbilical artery endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004484 ovarian surface epithelial cell skos:exactMatch cl CL:2000064 ovarian surface epithelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0004561 thymic stromal cell skos:exactMatch cl CL:4030001 stromal cell of thymus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0004574 dermal microvascular endothelial cell skos:exactMatch cl CL:0011030 dermal microvascular endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0004578 vascular smooth muscle cell skos:exactMatch cl CL:0000359 vascular associated smooth muscle cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0004720 mural cell skos:exactMatch cl CL:0008034 mural cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004725 embryonic fibroblast skos:exactMatch cl CL:2000042 embryonic fibroblast semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004729 peripheral blood lymphocyte skos:exactMatch cl CL:4030030 peripheral blood lymphocyte semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004759 venous endothelial cell skos:exactMatch cl CL:0002543 vein endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0004982 gonocyte skos:exactMatch cl CL:0000670 primordial germ cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0004985 angioblast skos:exactMatch cl CL:0000566 angioblastic mesenchymal cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0004996 myelinating Schwann cell skos:exactMatch cl CL:0000218 myelinating Schwann cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0004997 non-myelinating Schwann cell skos:exactMatch cl CL:0002376 non-myelinating Schwann cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005093 intercalated cell skos:exactMatch cl CL:0005010 renal intercalated cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0005096 epithelial stem cell skos:exactMatch cl CL:0000036 epithelial fate stem cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0005098 epidermal stem cell skos:exactMatch cl CL:1000428 stem cell of epidermis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0005158 juxtaglomerular cell skos:exactMatch cl CL:0000648 kidney granular cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005159 extraglomerular mesangial cell skos:exactMatch cl CL:0002173 extraglomerular mesangial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005170 keratocyte skos:exactMatch cl CL:0002363 keratocyte semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005362 trophoblast giant cell skos:exactMatch cl CL:0002488 trophoblast giant cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005402 spongiotrophoblast skos:exactMatch cl CL:0002499 spongiotrophoblast cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005569 hair follicle dermal papilla cell skos:exactMatch cl CL:0000346 hair follicle dermal papilla cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005588 peg cell skos:exactMatch cl CL:4033014 peg cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005589 oviduct ciliated cell skos:exactMatch cl CL:4030007 fallopian tube ciliated cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0005655 Th17 cell skos:exactMatch cl CL:0000899 T-helper 17 cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005680 large luteal cell skos:exactMatch cl CL:0000592 large luteal cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005729 chemoreceptor cell skos:exactMatch cl CL:0000206 chemoreceptor cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005738 lung microvascular endothelial cell skos:exactMatch cl CL:2000016 lung microvascular endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005783 tenocyte skos:exactMatch cl CL:0000388 tendon cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0005784 syncytium skos:exactMatch cl CL:0000228 multinucleate cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005787 skeletal muscle satellite cell skos:exactMatch cl CL:0000594 skeletal muscle satellite cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005790 promyelocyte skos:exactMatch cl CL:0000836 promyelocyte semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005812 lung endothelial cell skos:exactMatch cl CL:1001567 lung endothelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005817 adrenocortical cell skos:exactMatch cl CL:0002097 cortical cell of adrenal gland semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005819 histaminergic neuron skos:exactMatch cl CL:0011110 histaminergic neuron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005822 cochlear hair cell skos:exactMatch cl CL:4023120 cochlea auditory hair cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005824 vestibular hair cell skos:exactMatch cl CL:0000609 vestibular hair cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0005871 naive T-lymphocyte skos:exactMatch cl CL:0000898 naive T cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0005885 scolopale cell skos:exactMatch cl CL:0000382 scolopale cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0005937 intestinal epithelial cell skos:exactMatch cl CL:0002563 intestinal epithelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0006013 anterior horn cell skos:exactMatch cl CL:2000048 anterior horn motor neuron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0006033 Kenyon cell skos:exactMatch cl CL:0000673 Kenyon cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0006078 pluripotent stem cell skos:exactMatch cl CL:0002248 pluripotent stem cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0006102 activated skeletal muscle satellite cell skos:exactMatch cl CL:0008016 activated skeletal muscle satellite cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0006103 quiescent skeletal muscle satellite cell skos:exactMatch cl CL:0008012 quiescent skeletal muscle satellite cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0006105 skeletal muscle satellite stem cell skos:exactMatch cl CL:0008011 skeletal muscle satellite stem cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0006110 M1 macrophage skos:exactMatch cl CL:0000863 inflammatory macrophage semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0006111 M2 macrophage skos:exactMatch cl CL:0000890 alternatively activated macrophage semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0006170 nonpigmented ciliary epithelial cell skos:exactMatch cl CL:0002304 non-pigmented ciliary epithelial cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0006192 glomus cell skos:exactMatch cl CL:0002292 type I cell of carotid body semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 bto BTO:0006205 serotonergic neuron skos:exactMatch cl CL:0000850 serotonergic neuron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 bto BTO:0006389 enteric neuron skos:exactMatch cl CL:0007011 enteric neuron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.778 +bto BTO:0006429 white adipocyte skos:exactMatch cl CL:0000448 white fat cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 +bto BTO:0006430 brown adipocyte skos:exactMatch cl CL:0000449 brown fat cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 ccle 1321N1_CENTRAL_NERVOUS_SYSTEM 1321N1 skos:exactMatch cellosaurus CVCL_0110 1321N1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle 143B_BONE 143B skos:exactMatch cellosaurus CVCL_2270 143B semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle 143B_BONE 143B skos:exactMatch efo 0006355 143B semapv:ManualMappingCuration orcid:0000-0003-1307-2508 @@ -3017,6 +3044,7 @@ clo 0001345 3T3 cell skos:exactMatch mesh D016475 3T3 Cells semapv:ManualMapping clo 0001601 A549 cell skos:exactMatch mesh D000072283 A549 Cells semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/746fde/scripts/generate_clo_mesh_mappings.py 0.549 clo 0002585 COR-L23 cell skos:exactMatch efo 0002142 CORL23 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8 clo 0003704 Hep G2 cell skos:exactMatch mesh D056945 Hep G2 Cells semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/746fde/scripts/generate_clo_mesh_mappings.py 0.549 +clo 0004254 HS-5 cell skos:exactMatch efo 0005282 HS-5 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py 0.556 clo 0007606 MCF7 cell skos:exactMatch mesh D061986 MCF-7 Cells semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/746fde/scripts/generate_clo_mesh_mappings.py 0.549 clo 0007634 MDA-MB-231 cell skos:exactMatch efo 0001209 MDAMB231 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8 clo 0007634 MDA-MB-231 cell skos:exactMatch mesh D000092302 MDA-MB-231 Cells semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/746fde/scripts/generate_clo_mesh_mappings.py 0.549 @@ -9285,11 +9313,13 @@ uberon UBERON:0001862 vestibular labyrinth skos:exactMatch mesh D014722 Vestibul uberon UBERON:0001863 scala vestibuli skos:exactMatch mesh D054738 Scala Vestibuli semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001883 olfactory tubercle skos:exactMatch mesh D066208 Olfactory Tubercle semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001907 zona incerta skos:exactMatch mesh D065820 Zona Incerta semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0001931 lateral preoptic nucleus skos:exactMatch bto BTO:0006166 nucleus preopticus lateralis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0001944 pretectal region skos:exactMatch mesh D066250 Pretectal Region semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001947 red nucleus skos:exactMatch bto BTO:0006329 red nucleus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0001977 blood serum skos:exactMatch mesh D044967 Serum semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0001995 fibrocartilage skos:exactMatch mesh D051445 Fibrocartilage semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002020 gray matter skos:exactMatch mesh D066128 Gray Matter semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002035 medial preoptic nucleus skos:exactMatch bto BTO:0006167 nucleus preopticus medialis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002043 dorsal raphe nucleus skos:exactMatch mesh D065847 Dorsal Raphe Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002062 endocardial cushion skos:exactMatch mesh D054089 Endocardial Cushions semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002120 pronephros skos:exactMatch mesh D060910 Pronephros semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9309,20 +9339,24 @@ uberon UBERON:0002373 palatine tonsil skos:exactMatch mesh D014066 Palatine Tons uberon UBERON:0002396 vomer skos:exactMatch mesh D055172 Vomer semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002409 pericardial fluid skos:exactMatch mesh D000069236 Pericardial Fluid semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002412 vertebra skos:exactMatch bto BTO:0006196 vertebra semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 +uberon UBERON:0002430 lateral hypothalamic area skos:exactMatch bto BTO:0006481 lateral hypothalamus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002469 esophagus mucosa skos:exactMatch mesh D000071041 Esophageal Mucosa semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002493 uterine artery skos:exactMatch mesh D055988 Uterine Artery semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002540 lateral line system skos:exactMatch mesh D053403 Lateral Line System semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002548 larva skos:exactMatch mesh D007814 Larva semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002600 limbic lobe skos:exactMatch mesh D065726 Limbic Lobe semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002623 cerebral peduncle skos:exactMatch mesh D065850 Cerebral Peduncle semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002625 median preoptic nucleus skos:exactMatch bto BTO:0006168 nucleus preopticus medianus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002631 cerebral crus skos:exactMatch mesh D065843 Cerebral Crus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002639 midbrain reticular formation skos:exactMatch mesh D066265 Midbrain Reticular Formation semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002682 abducens nucleus skos:exactMatch mesh D065827 Abducens Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002684 nucleus raphe obscurus skos:exactMatch mesh D065849 Nucleus Raphe Obscurus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0002689 supraoptic crest skos:exactMatch bto BTO:0006268 organum vasculosum laminae terminalis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002707 corticospinal tract skos:exactMatch bto BTO:0006132 corticospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002714 rubrospinal tract skos:exactMatch bto BTO:0006159 rubrospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002743 basal forebrain skos:exactMatch mesh D066187 Basal Forebrain semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0002751 inferior temporal gyrus skos:exactMatch bto BTO:0006175 inferior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 +uberon UBERON:0002752 olivocerebellar tract skos:exactMatch bto BTO:0006157 olivocerebellar fiber system semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0002769 superior temporal gyrus skos:exactMatch bto BTO:0006177 superior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002771 middle temporal gyrus skos:exactMatch bto BTO:0006176 middle temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0002883 central amygdaloid nucleus skos:exactMatch mesh D066274 Central Amygdaloid Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9349,6 +9383,7 @@ uberon UBERON:0003911 choroid plexus epithelium skos:exactMatch bto BTO:0006008 uberon UBERON:0003937 reproductive gland skos:exactMatch bto BTO:0006162 reproductive gland semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0004016 dermatome skos:exactMatch bto BTO:0006248 dermatome semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9 uberon UBERON:0004341 primitive streak skos:exactMatch mesh D054240 Primitive Streak semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0004637 otic capsule skos:exactMatch bto BTO:0005981 auditory capsule semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0004676 spinal cord lateral horn skos:exactMatch mesh D066152 Spinal Cord Lateral Horn semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0004720 cerebellar vermis skos:exactMatch mesh D065814 Cerebellar Vermis semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0004725 piriform cortex skos:exactMatch mesh D066195 Piriform Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -9360,6 +9395,7 @@ uberon UBERON:0005408 circumventricular organ skos:exactMatch bto BTO:0006267 ci uberon UBERON:0005408 circumventricular organ skos:exactMatch mesh D066280 Circumventricular Organs semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005438 coronary sinus skos:exactMatch mesh D054326 Coronary Sinus semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005456 jugular foramen skos:exactMatch mesh D000080869 Jugular Foramina semapv:ManualMappingCuration orcid:0000-0001-9439-5346 +uberon UBERON:0005498 primitive heart tube skos:exactMatch bto BTO:0006179 cardiac tube semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 uberon UBERON:0005631 extraembryonic membrane skos:exactMatch mesh D005321 Extraembryonic Membranes semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005742 adventitia skos:exactMatch mesh D063194 Adventitia semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon UBERON:0005777 glomerular basement membrane skos:exactMatch mesh D050533 Glomerular Basement Membrane semapv:ManualMappingCuration orcid:0000-0001-9439-5346 diff --git a/src/biomappings/resources/predictions.tsv b/src/biomappings/resources/predictions.tsv index d73228bb..82f24172 100644 --- a/src/biomappings/resources/predictions.tsv +++ b/src/biomappings/resources/predictions.tsv @@ -1,42 +1,4 @@ source prefix source identifier source name relation target prefix target identifier target name type confidence source -apollosv 00000172 susceptibility skos:exactMatch pato PATO:0001043 susceptibility toward semapv:LexicalMatching 0.5555555555555556 mira -apollosv 00000243 duration skos:exactMatch pato PATO:0001309 duration semapv:LexicalMatching 0.7777777777777778 mira -apollosv 00000317 incubation period skos:exactMatch vsmo 0000499 intrinsic incubation period semapv:LexicalMatching 0.5555555555555556 mira -apollosv 00000496 ORCID skos:exactMatch ncit C188272 ORCID semapv:LexicalMatching 0.7777777777777778 mira -apollosv 00000596 symbiosis skos:exactMatch go GO:0044403 biological process involved in symbiotic interaction semapv:LexicalMatching 0.5555555555555556 mira -bto BTO:0002314 satellite cell skos:exactMatch cl CL:0000514 smooth muscle myoblast semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0002830 DB-1 cell skos:exactMatch cl CL:4033027 diffuse bipolar 1 cell semapv:LexicalMatching 0.555 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0003697 endometrial stromal cell skos:exactMatch cl CL:0002255 stromal cell of endometrium semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0003805 alpha-motoneuron skos:exactMatch cl CL:0008038 alpha motor neuron semapv:LexicalMatching 0.54 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0003982 retinal stem cell skos:exactMatch cl CL:4023129 retinoblast semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004122 bone marrow stromal cell skos:exactMatch cl CL:0010001 stromal cell of bone marrow semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004500 R1 cell skos:exactMatch cl CL:0000687 R1 photoreceptor cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004561 thymic stromal cell skos:exactMatch cl CL:4030001 stromal cell of thymus semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004578 vascular smooth muscle cell skos:exactMatch cl CL:0000359 vascular associated smooth muscle cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004982 gonocyte skos:exactMatch cl CL:0000670 primordial germ cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0004985 angioblast skos:exactMatch cl CL:0000566 angioblastic mesenchymal cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005093 intercalated cell skos:exactMatch cl CL:0005010 renal intercalated cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005096 epithelial stem cell skos:exactMatch cl CL:0000036 epithelial fate stem cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005098 epidermal stem cell skos:exactMatch cl CL:1000428 stem cell of epidermis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005158 juxtaglomerular cell skos:exactMatch cl CL:0000648 kidney granular cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005402 spongiotrophoblast skos:exactMatch cl CL:0002499 spongiotrophoblast cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005589 oviduct ciliated cell skos:exactMatch cl CL:4030007 fallopian tube ciliated cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005655 Th17 cell skos:exactMatch cl CL:0000899 T-helper 17 cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005783 tenocyte skos:exactMatch cl CL:0000388 tendon cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005784 syncytium skos:exactMatch cl CL:0000228 multinucleate cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005817 adrenocortical cell skos:exactMatch cl CL:0002097 cortical cell of adrenal gland semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005822 cochlear hair cell skos:exactMatch cl CL:4023120 cochlea auditory hair cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0005871 naive T-lymphocyte skos:exactMatch cl CL:0000898 naive T cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006013 anterior horn cell skos:exactMatch cl CL:2000048 anterior horn motor neuron semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006110 M1 macrophage skos:exactMatch cl CL:0000863 inflammatory macrophage semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006111 M2 macrophage skos:exactMatch cl CL:0000890 alternatively activated macrophage semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006170 nonpigmented ciliary epithelial cell skos:exactMatch cl CL:0002304 non-pigmented ciliary epithelial cell semapv:LexicalMatching 0.778 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006192 glomus cell skos:exactMatch cl CL:0002292 type I cell of carotid body semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006359 TEX cell skos:exactMatch cl CL:0011025 exhausted T cell semapv:LexicalMatching 0.549 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006429 white adipocyte skos:exactMatch cl CL:0000448 white fat cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -bto BTO:0006430 brown adipocyte skos:exactMatch cl CL:0000449 brown fat cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py -cemo distribution distribution skos:exactMatch pato PATO:0000060 spatial pattern semapv:LexicalMatching 0.5555555555555556 mira -cemo growth_rate growth rate skos:exactMatch ncit C185276 Biospecimen Growth Rate semapv:LexicalMatching 0.5555555555555556 mira chebi CHEBI:101096 ethoxzolamide skos:exactMatch mesh C523270 6-ethoxybenzothiazole-2-sulfonamide semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py chebi CHEBI:1019 N-(2-phosphonoethyl)cholamide skos:exactMatch mesh C013886 ciliatocholic acid semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py chebi CHEBI:10357 (-)-beta-caryophyllene skos:exactMatch mesh C024714 caryophyllene semapv:LexicalMatching 0.9 https://github.com/indralab/panacea_indra/blob/master/panacea_indra/make_ctd_tests.py @@ -9465,7 +9427,6 @@ clo 0002949 ES-D3 cell skos:exactMatch efo 0005910 ES-D3 semapv:LexicalMatching clo 0002950 ES-D3 cell skos:exactMatch efo 0005910 ES-D3 semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py clo 0003609 H69 cell skos:exactMatch efo 0002300 NCI-H69 semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py clo 0004252 HS-27A cell skos:exactMatch efo 0005283 HS-27A semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py -clo 0004254 HS-5 cell skos:exactMatch efo 0005282 HS-5 semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py clo 0007029 JM cell skos:exactMatch efo 0002796 Jurkat semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py clo 0007043 JURKAT cell skos:exactMatch efo 0002796 Jurkat semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/b250ea/scripts/generate_clo_mesh_mappings.py clo 0007050 K 562 cell skos:exactMatch cellosaurus CVCL_0004 K-562 semapv:UnspecifiedMatching 0.8 clo @@ -38735,11 +38696,9 @@ uberon UBERON:0000016 endocrine pancreas skos:exactMatch mesh D007515 Islets of uberon UBERON:0000044 dorsal root ganglion skos:exactMatch mesh D005727 Ganglia, Spinal semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0000167 oral cavity skos:exactMatch mesh D009055 Mouth semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0000341 throat skos:exactMatch mesh D010614 Pharynx semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0000990 reproductive system skos:exactMatch mesh D005835 Genitalia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001009 circulatory system skos:exactMatch mesh D002319 Cardiovascular System semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001173 biliary tree skos:exactMatch mesh D001659 Biliary Tract semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0001268 peritoneal fluid skos:exactMatch mesh D001202 Ascitic Fluid semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001377 quadriceps femoris skos:exactMatch mesh D052097 Quadriceps Muscle semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001439 compact bone tissue skos:exactMatch mesh D000071538 Cortical Bone semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38749,11 +38708,9 @@ uberon UBERON:0001683 jugal bone skos:exactMatch mesh D015050 Zygoma semapv:Lexi uberon UBERON:0001742 epiglottic cartilage skos:exactMatch mesh D004825 Epiglottis semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001797 vitreous humor skos:exactMatch mesh D014822 Vitreous Body semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001870 frontal cortex skos:exactMatch mesh D005625 Frontal Lobe semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0001931 lateral preoptic nucleus skos:exactMatch bto BTO:0006166 nucleus preopticus lateralis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0001943 midbrain tegmentum skos:exactMatch mesh D013681 Tegmentum Mesencephali semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001965 substantia nigra pars compacta skos:exactMatch mesh D065842 Pars Compacta semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0001966 substantia nigra pars reticulata skos:exactMatch mesh D065841 Pars Reticulata semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002035 medial preoptic nucleus skos:exactMatch bto BTO:0006167 nucleus preopticus medialis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002072 hypodermis skos:exactMatch mesh D040521 Subcutaneous Tissue semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002090 postcranial axial skeleton skos:exactMatch mesh D013131 Spine semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002101 limb skos:exactMatch mesh D005121 Extremities semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38762,18 +38719,13 @@ uberon UBERON:0002190 subcutaneous adipose tissue skos:exactMatch mesh D015434 P uberon UBERON:0002207 xiphoid process skos:exactMatch mesh D014989 Xiphoid Bone semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002295 scala media skos:exactMatch mesh D003053 Cochlear Duct semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002393 pharyngotympanic tube skos:exactMatch mesh D005064 Eustachian Tube semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002397 maxilla skos:exactMatch bto BTO:0006516 invertebrate maxilla semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py -uberon UBERON:0002430 lateral hypothalamic area skos:exactMatch bto BTO:0006481 lateral hypothalamus semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002590 prepyriform area skos:exactMatch mesh D066195 Piriform Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002625 median preoptic nucleus skos:exactMatch bto BTO:0006168 nucleus preopticus medianus semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002633 motor nucleus of trigeminal nerve skos:exactMatch mesh D066266 Trigeminal Motor Nucleus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002656 periamygdaloid area skos:exactMatch mesh D066277 Periamygdaloid Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002689 supraoptic crest skos:exactMatch bto BTO:0006268 organum vasculosum laminae terminalis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002689 supraoptic crest skos:exactMatch mesh D066278 Organum Vasculosum semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002704 metathalamus skos:exactMatch mesh D005829 Geniculate Bodies semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002705 midline nuclear group skos:exactMatch mesh D020644 Midline Thalamic Nuclei semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002726 cervical spinal cord skos:exactMatch mesh D066193 Cervical Cord semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0002752 olivocerebellar tract skos:exactMatch bto BTO:0006157 olivocerebellar fiber system semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0002754 predorsal bundle skos:exactMatch mesh D065844 Tectospinal Fibers semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002776 ventral nuclear group skos:exactMatch mesh D020651 Ventral Thalamic Nuclei semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0002895 secondary olfactory cortex skos:exactMatch mesh D018728 Entorhinal Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38781,10 +38733,8 @@ uberon UBERON:0002967 cingulate gyrus skos:exactMatch mesh D006179 Gyrus Cinguli uberon UBERON:0003011 facial motor nucleus skos:exactMatch mesh D065828 Facial Nucleus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0003128 cranium skos:exactMatch mesh D012886 Skull semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0004550 gastroesophageal sphincter skos:exactMatch mesh D049630 Esophageal Sphincter, Lower semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0004637 otic capsule skos:exactMatch bto BTO:0005981 auditory capsule semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0005343 cortical plate skos:exactMatch mesh D002540 Cerebral Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0005366 olfactory lobe skos:exactMatch mesh D066194 Olfactory Cortex semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0005498 primitive heart tube skos:exactMatch bto BTO:0006179 cardiac tube semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0005902 occipital region skos:exactMatch mesh D009778 Occipital Lobe semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0006098 basal nuclear complex skos:exactMatch mesh D001479 Basal Ganglia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0006514 pallidum skos:exactMatch mesh D005917 Globus Pallidus semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38798,7 +38748,6 @@ uberon UBERON:0007641 trigeminal nuclear complex skos:exactMatch mesh D014278 Tr uberon UBERON:0008275 carapace skos:exactMatch mesh D060105 Animal Shells semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0008969 dental follicle skos:exactMatch mesh D003795 Dental Sac semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0009040 deep circumflex iliac artery skos:exactMatch mesh D007083 Iliac Artery semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:0009201 nephric duct skos:exactMatch bto BTO:0005990 mesonephric duct semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:0009951 main olfactory bulb skos:exactMatch mesh D009830 Olfactory Bulb semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0011117 superior tibiofibular joint skos:exactMatch mesh D007719 Knee Joint semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:0011132 intercarpal joint skos:exactMatch mesh D050824 Carpal Joints semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py @@ -38809,8 +38758,6 @@ uberon UBERON:0016538 temporal cortex skos:exactMatch mesh D013702 Temporal Lobe uberon UBERON:0018141 anterior perforated substance skos:exactMatch mesh D066208 Olfactory Tubercle semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:2000006 ball skos:exactMatch mesh D015452 Precursor B-Cell Lymphoblastic Leukemia-Lymphoma semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:2000188 corpus cerebelli skos:exactMatch mesh D002531 Cerebellum semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py -uberon UBERON:2002053 bony plate skos:exactMatch bto BTO:0000967 osseous plate semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py -uberon UBERON:2002116 epibranchial organ skos:exactMatch bto BTO:0004195 pharyngeal organ semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py uberon UBERON:3011045 gasserian ganglion skos:exactMatch mesh D012668 Trigeminal Ganglion semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py uberon UBERON:3011048 genital system skos:exactMatch mesh D005835 Genitalia semapv:LexicalMatching 0.9 generate_uberon_mesh_mappings.py vido 0001123 viral disease skos:exactMatch doid DOID:934 viral infectious disease semapv:LexicalMatching 0.549371263656978 mira diff --git a/src/biomappings/resources/unsure.tsv b/src/biomappings/resources/unsure.tsv index ba203dce..d7e0cf8d 100644 --- a/src/biomappings/resources/unsure.tsv +++ b/src/biomappings/resources/unsure.tsv @@ -1,5 +1,9 @@ source prefix source identifier source name relation target prefix target identifier target name type source prediction_type prediction_source prediction_confidence apollosv 00000195 target population skos:exactMatch ncit C142728 Target Study Population semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +apollosv 00000243 duration skos:exactMatch pato PATO:0001309 duration semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.7777777777777778 +apollosv 00000317 incubation period skos:exactMatch vsmo 0000499 intrinsic incubation period semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556 +apollosv 00000596 symbiosis skos:exactMatch go GO:0044403 biological process involved in symbiotic interaction semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556 +bto BTO:0002314 satellite cell skos:exactMatch cl CL:0000514 smooth muscle myoblast semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556 ccle BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE BCP-1 skos:exactMatch cellosaurus CVCL_0107 BCP-1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE BDCM skos:exactMatch cellosaurus CVCL_4613 BDCM semapv:ManualMappingCuration orcid:0000-0003-1307-2508 ccle BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE BDCM skos:exactMatch efo 0002113 BDCM semapv:ManualMappingCuration orcid:0000-0003-1307-2508 @@ -21,6 +25,8 @@ ccle OSA80 OSA80 skos:exactMatch cellosaurus CVCL_EQ73 OSA-80 semapv:ManualMappi ccle P116 P116 skos:exactMatch cellosaurus CVCL_6429 P116 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 ccle P116 P116 skos:exactMatch cellosaurus CVCL_JU06 JHU116i semapv:ManualMappingCuration orcid:0000-0003-4423-4370 ccle TE4_OESOPHAGUS TE-4 skos:exactMatch cellosaurus CVCL_F784 TE4 [Mouse hybridoma] semapv:ManualMappingCuration orcid:0000-0003-4423-4370 +cemo distribution distribution skos:exactMatch pato PATO:0000060 spatial pattern semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556 +cemo growth_rate growth rate skos:exactMatch ncit C185276 Biospecimen Growth Rate semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556 chebi CHEBI:61700 (+)-valencene skos:exactMatch mesh C506706 valencene semapv:ManualMappingCuration orcid:0000-0003-4423-4370 chebi CHEBI:68540 teriflunomide skos:exactMatch mesh C072876 A 771726 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/indralab/panacea_indra/blob/master/panacea_indra/make_ctd_tests.py 0.9 chebi CHEBI:8416 Pristimerin skos:exactMatch mesh C009043 pristimerin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_chebi_mesh_mappings.py 0.95 @@ -75,6 +81,10 @@ mesh D059268 Atrophic Vaginitis skos:exactMatch doid DOID:11968 postmenopausal a mesh D063306 Mitochondrial Degradation skos:exactMatch go GO:0000423 mitophagy semapv:ManualMappingCuration orcid:0000-0003-4423-4370 obi OBI:0000430 plasmid skos:exactMatch ncbitaxon 45202 unidentified plasmid semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.778 obi OBI:0000737 cloning vector skos:exactMatch ncbitaxon 45196 unidentified cloning vector semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.778 +uberon UBERON:0002397 maxilla skos:exactMatch bto BTO:0006516 invertebrate maxilla semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:0009201 nephric duct skos:exactMatch bto BTO:0005990 mesonephric duct semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:2002053 bony plate skos:exactMatch bto BTO:0000967 osseous plate semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 +uberon UBERON:2002116 epibranchial organ skos:exactMatch bto BTO:0004195 pharyngeal organ semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 vo 0000491 active immunization skos:exactMatch mesh D014611 Vaccination semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556 vo 0005243 CoviVac skos:exactMatch mesh C000721867 COVI-VAC semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.7621109049680478 vo 0005246 COVIVAC skos:exactMatch mesh C000721867 COVI-VAC semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.7775716347144919