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index.html
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<!DOCTYPE html>
<html lang="en">
<head> <meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0"> <link
rel="stylesheet"
href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css"
integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm"
crossorigin="anonymous"
/>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/c3/0.6.12/c3.min.css"/>
<style>
h2 {
margin-top: 35px;
}
html, body {
height: 100%;
}
body {
display: flex;
flex-flow: column;
}
.footer {
margin-top: auto;
padding-top: 1em;
background-color: #f5f5f5;
}
</style> <title>Biosapiens Protein Feature Ontology</title></head>
<body>
<nav class="navbar navbar-expand-lg navbar-light bg-light">
<span class="navbar-brand">
Biosapiens Protein Feature Ontology
</span>
</nav>
<div class="container" style="margin-top: 50px; margin-bottom: 50px">
<div class="card">
<h5 class="card-header">
Metadata
</h5>
<div class="card-body">
<p>SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.</p>
<dl>
<dt>Number of Terms</dt>
<dd>0</dd>
<dt>Bioregistry</dt>
<dd>
<a href="https://bioregistry.io/bs">
<code>bioregistry:bs</code>
</a>
</dd>
<dt>Regular Expression Pattern</dt>
<dd><code>^\d+$</code></dd>
<dt>Example Page</dt>
<dd><a href="00042">00042</a></dd>
</dl>
<h3>Synonym Definitions</h3>
<ul>
<li>SynonymTypeDef(id='aa1', name='amino acid 1 letter code')</li>
<li>SynonymTypeDef(id='aa3', name='amino acid 3 letter code')</li>
<li>SynonymTypeDef(id='AAMOD', name='amino acid modification')</li>
<li>SynonymTypeDef(id='AGR', name='Alliance of Genome Resources')</li>
<li>SynonymTypeDef(id='BS', name='biosapiens')</li>
<li>SynonymTypeDef(id='dbsnp', name='dbsnp variant terms')</li>
<li>SynonymTypeDef(id='dbvar', name='DBVAR')</li>
<li>SynonymTypeDef(id='ebi_variants', name='ensembl variant terms')</li>
<li>SynonymTypeDef(id='RNAMOD', name='RNA modification" EXACT')</li>
<li>SynonymTypeDef(id='VAR', name='variant annotation term')</li>
</ul>
</div>
</div>
<div class="card" style="margin-top: 1em;">
<h5 class="card-header">
Relation Definitions
</h5>
<ul class="list-group list-group-flush">
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='adjacent_to', name='adjacent_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='associated_with', name='associated_with'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='complete_evidence_for_feature', name='complete_evidence_for_feature'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='connects_on', name='connects_on'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='contained_by', name='contained_by'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='contains', name='contains'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='derives_from', name='derives_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='disconnected_from', name='disconnected_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='edited_from', name='edited_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='edited_to', name='edited_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='evidence_for_feature', name='evidence_for_feature'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='exemplar_of', name='exemplar_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='finished_by', name='finished_by'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='finishes', name='finishes'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='gained', name='gained'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='genome_of', name='genome_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='guided_by', name='guided_by'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='guides', name='guides'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='has_integral_part', name='has_integral_part'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='has_origin', name='has_origin'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='has_part', name='has_part'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='has_quality', name='has_quality'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='homologous_to', name='homologous_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='integral_part_of', name='integral_part_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='is_consecutive_sequence_of', name='is_consecutive_sequence_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='lost', name='lost'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='maximally_overlaps', name='maximally_overlaps'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='member_of', name='member_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='non_functional_homolog_of', name='non_functional_homolog_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='orthologous_to', name='orthologous_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='overlaps', name='overlaps'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='paralogous_to', name='paralogous_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='part_of', name='part_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='partial_evidence_for_feature', name='partial_evidence_for_feature'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='position_of', name='position_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='processed_from', name='processed_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='processed_into', name='processed_into'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='recombined_from', name='recombined_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='recombined_to', name='recombined_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='sequence_of', name='sequence_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='similar_to', name='similar_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='started_by', name='started_by'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='starts', name='starts'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='trans_spliced_from', name='trans_spliced_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='trans_spliced_to', name='trans_spliced_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='transcribed_from', name='transcribed_from'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='transcribed_to', name='transcribed_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='translates_to', name='translates_to'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='translation_of', name='translation_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
<li class="list-group-item">TypeDef(reference=Reference(prefix='bs', identifier='variant_of', name='variant_of'), comment=None, namespace=None, definition=None, is_transitive=None, is_symmetric=None, domain=None, range=None, parents=[], xrefs=[], inverse=None, created_by=None, holds_over_chain=None, is_metadata_tag=None)</li>
</ul>
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